| 0 | - | cover | 1 | pencils: Scott McDaniel; inks: Scott McDaniel; colors: Matt Hollingsworth | |
| 1 | The Story So Far | recap | 1 | letters: typeset | |
| 2 | - | cover reprint (on interior page) | 1 | pencils: Phil Noto; inks: Phil Noto; colors: Phil Noto | Black Canary [Dinah Laurel Lance]; Oracle; Deathstroke the Terminator; Alfred Pennyworth |
| 3 | Blind Spot | comic story | 5 | script: Chuck Dixon; pencils: Dave Ross; inks: Andrew Pepoy; colors: Wildstorm FX; letters: Albert T. De Guzman | Black Canary [Dinah Laurel Lance]; Oracle; Deathstroke the Terminator; Nightwing [Dick Grayson]; Robin [Tim Drake]; Alfred Pennyworth; Spoiler; Green Arrow [Connor Hawke]; Eddie Fyers |
| 4 | - | cover reprint (on interior page) | 1 | pencils: Sean Phillips; inks: Sean Phillips; colors: Sean Phillips | Batman [Bruce Wayne] |
| 5 | The Turning Point | comic story | 22 | script: Ed Brubaker; pencils: Sean Phillips; inks: Sean Phillips; colors: Gregory Wright, Wildstorm FX; letters: John Costanza | Batman [Bruce Wayne]; Catwoman; Leslie Thompkins; Oracle; Flash [Barry Allen] (flashback); Joker (flashback); Two-Face (flashback) |
| 6 | - | cover reprint (on interior page) | 1 | pencils: Scott McDaniel; inks: Scott McDaniel; colors: Patrick Martin | Batman [Bruce Wayne] |
| 7 | Reasons | comic story | 22 | script: Ed Brubaker; pencils: Scott McDaniel; inks: Andy Owens; colors: Gregory Wright, Wildstorm FX; letters: John Costanza | Batman [Bruce Wayne]; Catwoman [Selina Kyle]; Thomas Wayne (flashback); Martha Wayne (flashback); Punch; Tony Rulyanchik |
| 8 | - | cover reprint (on interior page) | 1 | pencils: Andrew Robinson; inks: Andrew Robinson; colors: Andrew Robinson | Batman [Bruce Wayne] |
| 9 | Access | comic story | 22 | script: Greg Rucka; pencils: Steve Lieber; inks: Mark McKenna, Robin Riggs; colors: Jason Wright, Wildstorm FX; letters: Todd Klein | Batman [Bruce Wayne]; Alfred Pennyworth; Detective Cris Allen; Detective Renee Montoya; Lieutenant Maggie Sawyer; David Said; Amherst |
| 10 | - | cover reprint (on interior page) | 1 | pencils: Damion Scott; inks: Robert Campanella; colors: Patrick Martin | Batgirl [Cassandra Cain]; Nightwing [Dick Grayson]; Robin [Tim Drake] |
| 11 | Please. Please Let Me Live | comic story | 22 | script: Kelley Puckett; pencils: Damion Scott; inks: Robert Campanella; colors: Jason Wright, Digital Chameleon; letters: John Costanza | Batgirl [Cassandra Cain]; Nightwing [Dick Grayson]; Oracle [Barbara Gordon]; Alfred Pennyworth |
| 12 | - | cover reprint (on interior page) | 1 | pencils: Brian Bolland; inks: Brian Bolland; colors: Brian Bolland | Azrael; Batman |
| 13 | Turnabout | comic story | 22 | script: Devin Grayson; pencils: Roger Robinson; inks: John Floyd; colors: Gloria Vasquez, Wildstorm FX; letters: Bill Oakley | Nightwing; Azrael; Oracle [Barbara Gordon]; Batman; Robin [Tim Drake] |
| 14 | - | cover reprint (on interior page) | 1 | pencils: Mike Zeck; inks: Jerry Ordway; colors: Robert Ro, Alex Bleyaert | Azrael; Batman |
| 15 | Confession | comic story | 22 | script: Dennis O'Neil; pencils: Sergio Cariello; inks: James Pascoe; colors: Rob Ro, Alex Bleyaert; letters: Jack Morelli | Azrael; Batman; Robin [Tim Drake]; Nightwing; Oracle; Dr. Thompkins; Harold |
| 16 | New Boss | comic story | 9 | script: Dennis O'Neil; pencils: Sergio Cariello; inks: Sergio Cariello; colors: Rob Ro, Alex Bleyaert; letters: Jack Morelli | |
| 17 | - | cover reprint (on interior page) | 1 | pencils: Steve Lieber; inks: Bill Sienkiewicz | Batma [Bruce Wayne]; Sasha Bordeaux |
| 18 | Principle | comic story | 22 | script: Greg Rucka; pencils: Sergio Cariello; inks: John Nyberg; colors: Jason Wright, Wildstorm FX; letters: Todd Klein | Alfred Pennyworth; Sasha Bordeaux; Amherst |
| 19 | - | cover reprint (on interior page) | 1 | pencils: Dave Gibbons; inks: Dave Gibbons | Batman |
| 20 | Clean | comic story | 22 | script: Devin Grayson; pencils: Roger Robinson; inks: John Floyd; colors: Gloria Vasquez, Wildstorm FX; letters: Bill Oakley | Amherst; Batman; Robert Deren; Scott Wilson; Dana Kellerman; Eli Goodman; Gregory Baithswaine |
| 21 | - | cover reprint (on interior page) | 1 | pencils: Phil Noto; inks: Phil Noto; colors: Phil Noto | Batman [Bruce Wayne]; Batgirl [Cassandra Cain]; Oracle [Barbara Gordon]; David Cain; Lex Luthor |
| 22 | Courage | comic story | 38 | script: Ed Brubaker; pencils: Scott McDaniel; inks: Andy Owens; colors: Gregory Wright, Wildstorm FX; letters: John Costanza | Batman [Bruce Wayne]; Alfred Pennyworth; Batgirl [Cassandra Cain]; Nightwing [Dick Grayson]; Oracle [Barbara Gordon]; Robin [Tim Drake]; Armherst; David Cain; Lex Luthor; Mercy; Sasha Bordeaux (cameo) |
| 23 | - | cover reprint (on interior page) | 1 | pencils: Bill Sienkiewicz; inks: Bill Sienkiewicz; colors: Alex Sinclair | Batman; Sasha Bordeaux |
| 24 | Atonement, Part 1 | comic story | 22 | script: Greg Rucka; pencils: Steve Lieber; inks: Mark McKenna; colors: Jason Wright, Wildstorm FX; letters: Todd Klein | Sasha Bordeaux; Batman [Bruce Wayne]; Maggie Sawyer; Renee Montoya; Alfred Pennyworth; Huntress [Helena Bertinelli] (cameo); Spoiler [Stephanie Brown] (cameo) |
| 25 | - | cover reprint (on interior page) | 1 | pencils: Bill Sienkiewicz; inks: Bill Sienkiewicz | Batman |
| 26 | Atonement, Part 2 | comic story | 22 | script: Greg Rucka; pencils: Steve Lieber; inks: Mark McKenna; colors: Jason Wright, Wildstorm FX; letters: Todd Klein | Batman; Sasha Bordeaux; Alfred Pennyworth |
| 27 | - | cover reprint (on interior page) | 1 | pencils: Bill Sienkiewicz; inks: Bill Sienkiewicz | Batman |
| 28 | Atonement, Part Three | comic story | 30 | script: Greg Rucka; pencils: Rick Burchett; inks: Jim Royal; colors: Jason Wright, Wildstorm FX; letters: Todd Klein | Sasha Bordeaux; Batman [Bruce Wayne]; Oracle [Barbara Gordon]; Alfred Pennyworth; Checkmate |
| 29 | - | cover reprint (on interior page) | 1 | pencils: Brian Bolland; inks: Brian Bolland; colors: Brian Bolland | Bruce Wayne; Batman |
| 30 | 24/7 | comic story | 22 | script: Devin Grayson; pencils: Roger Robinson; inks: John Floyd; colors: Gloria Vasquez, Wildstorm FX; letters: Bill Oakley, John Workman | Bruce Wayne [Batman]; Alfred Pennyworth; Dwight Amerson; Mr. Carmichael; Mickey; Fiona; Cody; Mayor Dickinson; Dr. Leslie Thompkins; Fritz Manning; Tanya Fox; Stanley; Mike; Rus; Robin [Tim Drake]; Detective Renee Montoya; Two-Face [Harvey Dent]; Mei; Oracle [Barbara Gordon] |
| 31 | - | cover reprint (on interior page) | 1 | pencils: Scott McDaniel; inks: Scott McDaniel; colors: Patrick Martin | Batman; Deadshot; David Cain |
| 32 | Death-Wish for Two | comic story | 22 | script: Ed Brubaker, Geoff Johns; pencils: Scott McDaniel; inks: Andy Owens; colors: Gregory Wright, Wildstorm FX; letters: John Costanza | Batman; Oracle [Barbara Gordon]; David Cain; Deadshot; Alfred Pennyworth |
| 33 | - | cover reprint (on interior page) | 1 | pencils: Scott McDaniel; inks: Scott McDaniel | Batman; David Cain; Deadshot |
| 34 | Death-Wish for Two, Conclusion | comic story | 21 | script: Ed Brubaker, Geoff Johns; pencils: Scott McDaniel; inks: Andy Owens; colors: Gregory Wright, Wildstorm FX; letters: John Costanza | Batman; David Cain; Deadshot; Alfred Pennyworth |
| 35 | - | cover reprint (on interior page) | 1 | pencils: Damion Scott; inks: Robert Campanella; colors: Patrick Martin | Batgirl [Cassandra Cain]; David Cain |
| 36 | Father's Day | comic story | 22 | script: Kelley Puckett; pencils: Damion Scott; inks: Robert Campanella; colors: Jason Wright, Digital Chameleon; letters: John Costanza | Batgirl [Cassandra Cain]; Batman; David Cain; Oracle [Barbara Gordon] |
| 37 | Afterword | foreword, introduction, preface, afterword | 2 | script: Greg Rucka | |
| 38 | Some Closing Thoughts | foreword, introduction, preface, afterword | 1 | script: Ed Brubaker | |