| 0 | - | cover | 1 | pencils: Tom Grummett; inks: Scott McDaniel | Batman, Dick Grayson |
| 1 | - | credits, title page | 1 | | |
| 2 | Indicia | credits, title page | 1 | letters: typeset | |
| 3 | - | credits, title page | 1 | letters: typeset | |
| 4 | Prodigal: Part I: Robin and Batman | comic story | 22 | script: Doug Moench; pencils: Mike Gustovich; inks: Romeo Tanghal; colors: Adrienne Roy; letters: Ken Bruzenak | Batman, Batman, Commissioner James Gordon, Sarah Essen, Dick Grayson, Waylon Jones, Killer Croc, Alfred Pennyworth, Robin, Bruce Wayne |
| 5 | Prodigal Part Two | comic story | 24 | script: Alan Grant; pencils: Bret Blevins; inks: Bret Blevins; colors: Adrienne Roy; letters: Todd Klein | Batman, Harvey Dent, Tim Drake, Commissioner James Gordon, Dick Grayson, Robin, Scarface, Two-Face, The Ventriloquist, Arnold Wesker |
| 6 | The Vermin Factor [Prodigal Three] | comic story | 21 | script: Chuck Dixon; pencils: Lee Weeks; inks: Joe Rubinstein; colors: Adrienne Roy; letters: John Costanza | Harold Allnut, Batman, Harvey Dent, Jack Drake, Commissioner James Gordon, Dick Grayson, Robin, Two-Face |
| 7 | Two in Every Crowd [Prodigal Four] | comic story | 22 | script: Chuck Dixon; pencils: Phil Jimenez; inks: Ray Kryssing; colors: Adrienne Roy; letters: Albert DeGuzman | Batman, Harvey Bullock, Harvey Dent, Jack Drake, Tim Drake, Ariana Dzerchenko, Dick Grayson, Renée Montoya, Robin, Two-Face |
| 8 | Double Deuce [Prodigal Part V] | comic story | 22 | script: Doug Moench; pencils: Mike Gustovich; inks: Romeo Tanghal; colors: Adrienne Roy; letters: Ken Bruzenak | Batman, Harvey Bullock, Harvey Dent, Tim Drake, Commissioner James Gordon, Dick Grayson, Robin, Two-Face |
| 9 | Prodigal Part Six | comic story | 24 | script: Alan Grant; pencils: Bret Blevins; inks: Bret Blevins; colors: Adrienne Roy; letters: Todd Klein | Batman, Harvey Dent, Sarah Essen, Lucius Fox, Commissioner James Gordon, Dick Grayson, Robin, Two-Face |
| 10 | A Twice Told Tale [Prodigal Seven] | comic story | 22 | script: Chuck Dixon; pencils: Lee Weeks, Graham Nolan; inks: Joe Rubinstein; colors: Adrienne Roy; letters: John Costanza | Batman, Harvey Bullock, Harvey Dent, Tim Drake, Commissioner James Gordon, Dick Grayson, Robin, Two-Face |
| 11 | - | illustration | 1 | | |
| 12 | Bullies [Prodigal Eight] | comic story | 20 | script: Chuck Dixon; pencils: Phil Jimenez; inks: John Stokes; colors: Adrienne Roy; letters: Albert DeGuzman | Batman, Jack Drake, Tim Drake, Ariana Dzerchenko, Dick Grayson, KGBeast, Anatoli Knyazev, Robin, Dana Winters |
| 13 | - | illustration | 1 | | |
| 14 | One Night in the War Zone [Prodigal IX] | comic story | 22 | script: Doug Moench; pencils: Ron Wagner; inks: Joe Rubinstein; colors: Adrienne Roy; letters: Ken Bruzenak | Batman, Tim Drake, Dick Grayson, Robin |
| 15 | Prodigal Part Ten | comic story | 24 | script: Alan Grant; pencils: MD Bright; inks: Scott Hanna; colors: Adrienne Roy; letters: Todd Klein | Batman, Dick Grayson |
| 16 | Knight Without Armor [Prodigal Eleven] | comic story | 22 | script: Chuck Dixon; pencils: Graham Nolan; inks: Klaus Janson; colors: Adrienne Roy; letters: John Costanza | Azrael, Batman, Harvey Bullock, Dick Grayson, Steeljacket, Jean-Paul Valley, Bruce Wayne |
| 17 | Wings Over Gotham [Prodigal Conclusion] | comic story | 22 | script: Chuck Dixon; pencils: John Cleary, Phil Jimenez; inks: Ray Kryssing, Phil Jimenez; colors: Adrienne Roy; letters: Albert DeGuzman | Batman, Batman, Harvey Bullock, Tim Drake, Dick Grayson, Renée Montoya, Nightwing, Robin, Steeljacket, Bruce Wayne |
| 18 | Cover Gallery | illustration | 1 | | |
| 19 | Prodigal Part One | cover reprint (on interior page) | 1 | pencils: Mike Manley; inks: Mike Manley | Batman, Dick Grayson, Waylon Jones, Killer Croc |
| 20 | Prodigal Five | cover reprint (on interior page) | 1 | pencils: Mike Manley; inks: Mike Manley; colors: Bob Le Rose | Harvey Dent, Two-Face |
| 21 | Prodigal Nine | cover reprint (on interior page) | 1 | pencils: Ron Wagner; inks: Joe Rubinstein; colors: Bob Le Rose | Batman, Dick Grayson |
| 22 | Prodigal Two | cover reprint (on interior page) | 1 | pencils: Brian Stelfreeze; inks: Brian Stelfreeze; colors: Brian Stelfreeze | Batman, Harvey Dent, Dick Grayson, Scarface, Two-Face, The Ventriloquist, Arnold Wesker |
| 23 | Prodigal Six | cover reprint (on interior page) | 1 | pencils: Brian Stelfreeze; inks: Brian Stelfreeze; colors: Brian Stelfreeze | Harvey Dent, Tim Drake, Alfred Pennyworth, Robin, Two-Face |
| 24 | Prodigal Ten | cover reprint (on interior page) | 1 | pencils: Brian Stelfreeze; inks: Brian Stelfreeze; colors: Brian Stelfreeze | Batman, Dick Grayson |
| 25 | Prodigal Three | cover reprint (on interior page) | 1 | pencils: Lee Weeks; inks: Lee Weeks; colors: Bob LeRose | Batman, Dick Grayson |
| 26 | Prodigal Seven | cover reprint (on interior page) | 1 | pencils: Lee Weeks; inks: Lee Weeks | Batman, Harvey Dent, Dick Grayson, Robin, Two-Face |
| 27 | Prodigal Eleven | cover reprint (on interior page) | 1 | pencils: Graham Nolan; inks: Graham Nolan; colors: Bob LeRose | Batman, Tim Drake, Dick Grayson, Robin |
| 28 | Prodigal Four | cover reprint (on interior page) | 1 | pencils: Tom Grummett; inks: Ray Kryssing; colors: Bob LeRose | Harvey Dent, Tim Drake, Robin, Two-Face |
| 29 | Prodigal Eight | cover reprint (on interior page) | 1 | pencils: Tom Grummett; inks: Ray Kryssing; colors: Bob LeRose | Tim Drake, Ariana Dzerchenko, Robin |
| 30 | Conflict! | cover reprint (on interior page) | 1 | pencils: Tom Grummett; inks: Tom Grummett | Batman, Tim Drake, Dick Grayson, Robin, Steeljacket, Bruce Wayne |
| 31 | Bruce Wayne Is Batman No More | promo (ad from the publisher) | 1 | pencils: Lee Weeks, Graham Nolan; inks: Joe Rubinstein | Batman, Tim Drake, Dick Grayson, Robin |