| 0 | - | cover | 1 | pencils: J. G. Jones; inks: J. G. Jones; colors: Alex Sinclair | Superman; Wonder Woman; Batman; Green Lantern; Flash |
| 1 | Final Crisis: Director's Cut Cover by J. G. Jones | cover reprint (on interior page) | 1 | pencils: J. G. Jones; inks: J. G. Jones | Green Lantern [Hal Jordan] |
| 2 | D.O.A.: The God of War! | comic story | 32 | script: Grant Morrison; pencils: J. G. Jones; inks: J. G. Jones | Anthro; Metron; Dan Turpin; Orion (death); Green Lantern Corps [Green Lantern [Hal Jordan]; Green Lantern [John Stewart]]; Black Racer; Question [Renee Montoya]; Guardians of the Universe; The League of Titans [Empress [Anita Fite]; Mas Y Menos; Sparx [Donna Carol Force]]; Justice League of America |
| 3 | Script | text story | 13 | script: Grant Morrison | |
| 4 | Director's Commentary | text article | 8 | script: Grant Morrison, J. G. Jones, Eddie Berganza; pencils: J. G. Jones; inks: J. G. Jones | |
| 5 | Final Crisis Secret Files Cover by Frank Quitely | cover reprint (on interior page) | 1 | pencils: Frank Quitely; inks: Frank Quitely | Libra |
| 6 | Sliver Cover by Jim Lee, Richard Friend and Randy Mayor | cover reprint (on interior page) | 1 | pencils: Jim Lee; inks: Richard Friend; colors: Randy Mayor | Wonder Woman |
| 7 | Balancing Act! | comic story | 24 | script: Len Wein; pencils: Tony Shasteen; inks: Tony Shasteen; colors: Alex Bleyaert; letters: Rob Leigh | Libra [Justin Ballantine]; Justice League of America [Hawkgirl [Kendra Saunders]; Green Lantern [Hal Jordan]; Wonder Woman; Flash [Wally West]; Red Arrow; Superman; Martian Manhunter; Batman [Bruce Wayne]; Aquaman; Elongated Man; Flash [Barry Allen]]; Injustice Gang of the World [Scarecrow; Mirror M |
| 8 | Final Crisis Requiem Cover by Doug Mahnke, Christian Alamy and David Baron | cover reprint (on interior page) | 1 | pencils: Doug Mahnke; inks: Christian Alamy; colors: David Baron | Martian Manhunter |
| 9 | Sliver Cover by J. G. Jones | cover reprint (on interior page) | 1 | pencils: J. G. Jones; inks: J. G. Jones; colors: J. G. Jones | Martian Manhunter [J'onn J'onzz] |
| 10 | Caretakers of Mars | comic story | 30 | script: Peter J. Tomasi; pencils: Doug Mahnke; inks: Christian Alamy, Rodney Ramos; colors: Nei Ruffino; letters: John J. Hill | Martian Manhunter [J'onn J'onzz; John Jones; Josh Johnstone] (origin; death; corpse); Justice League of America [JLA; Batman [Bruce Wayne]; Black Canary [Dinah Lance]; Black Lightning [Jefferson Pierce]; Firestorm [Jason Rusch]; Flash [Wally West]; Green Lantern [John Stewart]; Hawkgirl [Kendra Saun |
| 11 | Final Crisis Resist Cover by Ryan Sook and Jeromy Cox | cover reprint (on interior page) | 1 | pencils: Ryan Sook; inks: Ryan Sook; colors: Jeromy Cox | White King [Mr. Terrific; Michael Holt] |
| 12 | Sliver Cover by Rodolfo Migliari | cover reprint (on interior page) | 1 | pencils: Rodolfo Migliari; inks: Rodolfo Migliari; colors: Rodolfo Migliari | OMACs; Cheetah [Barbara Minerva] |
| 13 | Resist | comic story | 30 | script: Greg Rucka, Eric Trautmann; pencils: Ryan Sook; inks: Marco Rudy; colors: Jeromy Cox; letters: John J. Hill | Checkmate [Black King [Taleb Beni Khalid]; Black Queen [Sasha Bordeaux]; Black Queen's Bishop [Jessica Midnight]; Black Queen's Knight [Beatrice Da Costa; Fire]; Castellan [Carl Draper]; Pawn 922 [Snapper Carr]; White King [Michael Holt; Mr. Terrific]; White King's Bishop [Thinker]; White King's Kni |
| 14 | The Anti-Life Equation | text story | 1 | script: Grant Morrison | |
| 15 | The Words of Lilith, Chapter 13, Verses 31-41 | text story | 1 | script: Greg Rucka; pencils: Steve Lieber; inks: Steve Lieber | |
| 16 | Secret Files Sketchbook | illustration | 4 | script: Grant Morrison; pencils: J. G. Jones | Justifiers; Dark Mary Marvel; Captain Allen Atom; Wonder Wagon; Doc Fate; Overman; Overgirl; Mandrakk, the Dark Monitor; Superdemon; Weeja Dell; Aquaman |