| 0 | - | cover | 1 | pencils: Frank Quitely; inks: Frank Quitely; colors: Val Staples | Dynamo; NoMan; Menthor; Lightning |
| 1 | - | blank page(s) | 1 | | |
| 2 | T.H.U.N.D.E.R. Agents Volume One | credits, title page | 1 | pencils: ChrisCross; inks: ChrisCross; colors: Brad Anderson | |
| 3 | T.H.U.N.D.E.R. Agents | credits, title page | 2 | pencils: ChrisCross; inks: ChrisCross; colors: Brad Anderson | |
| 4 | Editorial Credits | credits, title page | 1 | pencils: ChrisCross; inks: ChrisCross; colors: Brad Anderson | |
| 5 | - | cover reprint (on interior page) | 1 | pencils: Frank Quitely; inks: Frank Quitely; colors: Val Staples | Dynamo; NoMan; Menthor; Lightning |
| 6 | - | illustration | 1 | pencils: Frank Quitely; colors: Frank Quitely; letters: Frank Quitely | |
| 7 | The High Road | comic story | 30 | script: Nick Spencer; pencils: Cafu; inks: BIT; colors: Santiago Arcas; letters: swands | Colleen Franklin; Asa (A SPIDER Agent); Richard Lyle [Dylan Price] (a double agent); Dynamo (dies in this story); Lightning (dies in this story); Raven; Toby Henson; Dynamo (new recruit); NoMan (new recruit); Lightning (new recruit) |
| 8 | - | cover reprint (on interior page) | 1 | pencils: Gary Frank; inks: Gary Frank; colors: Brad Anderson | Dynamo; Lightning; NoMan; Spider |
| 9 | - | illustration | 1 | pencils: Gary Frank; inks: Gary Frank | |
| 10 | Live Fast, Die Young | comic story | 30 | script: Nick Spencer; pencils: Cafu, ChrisCross; inks: BIT, ChrisCross; colors: Santiago Arcas, Brad Anderson; letters: swands | |
| 11 | - | cover reprint (on interior page) | 1 | pencils: Chris Sprouse; inks: Karl Story; colors: Guy Major | Mentor; NoMan; Dynamo |
| 12 | - | illustration | 1 | pencils: Chris Sprouse | |
| 13 | The Man Who Wasn't There... | comic story | 20 | script: Nick Spencer; pencils: Cafu, Howard Chaykin; inks: BIT, Howard Chaykin; colors: Santiago Arcas, Jesus Aburtov; letters: swands | |
| 14 | - | cover reprint (on interior page) | 1 | pencils: Ethan Van Sciver; inks: Scott Hanna; colors: Hi-Fi | Dynamo; Spider |
| 15 | - | illustration | 1 | pencils: Ethan Van Sciver | |
| 16 | Get What You Pay For | comic story | 20 | script: Nick Spencer; pencils: George Pérez, Cafu; inks: George Pérez, Scott Koblish, BIT; colors: Blond, Santiago Arcas; letters: swands | |
| 17 | A Traitor Revealed! | cover reprint (on interior page) | 1 | pencils: Francis Manapul; inks: Francis Manapul; colors: Brian Buccellato | Dynamo; NoMan; Lightning; Menthor |
| 18 | - | illustration | 1 | pencils: Francis Manapul | |
| 19 | Never the Whole Truth | comic story | 20 | script: Nick Spencer; pencils: Cafu, Ryan Sook; inks: BIT, Ryan Sook; colors: Santiago Arcas, Ryan Sook; letters: swands | Fraser (also in flashback); Toby Henson (also in flashback as James); Spider; Lightning; Colleen Franklin; NoMan; Dynamo |
| 20 | - | cover reprint (on interior page) | 1 | pencils: John Cassaday; inks: John Cassaday; colors: Alex Sinclair | Dynamo; NoMan; Menthor; Colleen Franklin |
| 21 | - | illustration | 1 | pencils: John Cassaday; inks: John Cassaday | |
| 22 | Scared Little Girls | comic story | 20 | script: Nick Spencer; pencils: Cafu; inks: BIT; colors: Santiago Arcas; letters: Patrick Brosseau | Colleen Franklin; Toby Henson; NoMan; Dynamo [Eric]; Amal Taha; The Iron Maiden; Farouk Ammas (Death) |
| 23 | - | cover reprint (on interior page) | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | Iron Maiden; Dynamo |
| 24 | - | illustration | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | |
| 25 | On Victoria | comic story | 15 | script: Nick Spencer; pencils: Cafu, Mike Grell; inks: BIT, Mike Grell; colors: Santiago Arcas, Val Staples; letters: Patrick Brosseau | Colleen Franklin (also in 80s flashback); Dynamo [Len Brown] (80s flashback); Iron Maiden (80s flashback) |
| 26 | The Iron Maiden Makes Her Move | comic story | 5 | script: Nick Spencer; pencils: Nick Dragotta; inks: Nick Dragotta; colors: Lee Loughridge; letters: Patrick Brosseau | Dynamo; Iron Maiden; Lightning; Noman; Raven |
| 27 | - | cover reprint (on interior page) | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | Iron Maiden |
| 28 | - | illustration | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | |
| 29 | Cold-Blooded Old Times | comic story | 15 | script: Nick Spencer; pencils: Dan Panosian, Mike Grell; inks: Dan Panosian, Mike Grell; colors: Brad Anderson, Val Staples; letters: Patrick Brosseau | Colleen Franklin; Iron Maiden (also in 80s flashback); Bill; Len Brown [Dynamo] (80s flashback) |
| 30 | The Warlord Returns | comic story | 5 | script: Nick Spencer; pencils: Nick Dragotta; inks: Nick Dragotta; colors: Lee Loughridge; letters: Patrick Brosseau | Uru; Spider; Iron Maiden; Dynamo; Lightning; NoMan; Raven |
| 31 | - | cover reprint (on interior page) | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | |
| 32 | - | illustration | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | |
| 33 | Yours Always | comic story | 15 | script: Nick Spencer; pencils: Dan Panosian, Mike Grell; inks: Dan Panosian, Mike Grell; colors: Brad Anderson, Val Staples; letters: Patrick Brosseau | Iron Maiden (also in flashback); Dynamo (dies in flashback); Colleen; T.H.U.N.D.E.R. Agents [NoMan; Lightning; Dynamo; Menthor] |
| 34 | A Farewell to Our Hero | comic story | 5 | script: Nick Spencer; pencils: Nick Dragotta; inks: Nick Dragotta; colors: Lee Loughridge; letters: Patrick Brosseau | Dynamo; Lightning; NoMan; Raven; Kathryn Kane |
| 35 | - | cover reprint (on interior page) | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | |
| 36 | - | illustration | 1 | pencils: Fiona Staples; inks: Fiona Staples; colors: Fiona Staples | |
| 37 | Death & the Maiden | comic story | 15 | script: Nick Spencer; pencils: Dan McDaid, Mike Grell; inks: Dan McDaid, Mike Grell; colors: Brad Anderson, Val Staples; letters: Jared K. Fletcher | Iron Maiden (also in flashback); Bill Henry (dies in flashback); Colleen; T.H.U.N.D.E.R. Agents [Dynamo; NoMan; Lightning]; Toby Heston |
| 38 | Len Finds Love | comic story | 5 | script: Nick Spencer; pencils: Nick Dragotta; inks: Nick Dragotta; colors: Lee Loughridge; letters: Jared K. Fletcher | Len Brown; Iron Maiden |
| 39 | - | cover reprint (on interior page) | 1 | pencils: Darwyn Cooke; inks: Darwyn Cooke; colors: Darwyn Cooke | Dynamo [Len Brown]; NoMan; Lightning [Guy Gilbert]; Menthor [John Janus]; T.H.U.N.D.E.R. Squad [Kitten Kane] |
| 40 | - | cover reprint (on interior page) | 2 | pencils: Wally Wood, Dan Adkins, Steve Ditko; inks: Wally Wood | |
| 41 | Character Designs | illustration | 9 | script: Cafu; pencils: Cafu; inks: Cafu; colors: Cafu; letters: Cafu | |
| 42 | - | blank page(s) | 1 | | |
| 43 | Is It Better to Burn Out or to Fade Away? | promo (ad from the publisher) | 1 | pencils: Cafu; inks: BIT | |