| 0 | - | cover | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Yorick Brown; Ampersand |
| 1 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Captain Kilina; Yorick Brown; Ampersand |
| 2 | Girl on Girl | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Captain Kilina; Perl; Harper; Dr. Allison Mann; Ampersand; Lt. Rose Copen; Captain Belleville |
| 3 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Agent 355; Dr. Allison Mann |
| 4 | Chapter Two | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Captain Kilina; Dr. Allison Mann; Ampersand; Lt. Rose Copen; Captain Belleville |
| 5 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Yorick Brown; Ampersand |
| 6 | Chapter Three | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Captain Kilina; Dr. Allison Mann; Ampersand; Lt. Rose Copen; Captain Belleville |
| 7 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Ampersand |
| 8 | Conclusion | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Captain Kilina; Dr. Allison Mann; Ampersand; Lt. Rose Copen; Captain Belleville; Alter Tse'Elon |
| 9 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Beth Deville |
| 10 | Boy Loses Girl | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Beth Deville; Yorick Brown; Hero Brown |
| 11 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | |
| 12 | Paper Dolls | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Paloma West; Yorick Brown; Ampersand; Captain Belleville; Rose Copen; Agent 355; Dr. Allison Mann |
| 13 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Agent 355 |
| 14 | Chapter Two | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Paloma West; Rose Copen; Dr. Allison Mann; Ampersand |
| 15 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | |
| 16 | Conclusion | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra, Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Rose Copen; Dr. Allison Mann; Yorick Brown; Agent 355; Congresswoman Jennifer Brown; Alter |
| 17 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | |
| 18 | The Hour of Our Death | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Hero Brown; Beth; Sister Lucia Ober; Yorick Brown |
| 19 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Agent 355 |
| 20 | Buttons | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Rose Copen; Dr. Allison Mann; Agent 86 (flashback); Agent 3 (flashback); Agent 1033 |
| 21 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Ampersand |
| 22 | 1,000 Typewriters | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Ampersand; Yorick Brown; Dr. Allison Mann; Agent 355; Toyota |
| 23 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Yorick Brown; Ampersand |
| 24 | Kimono Dragons | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Rose Copen; Dr. Allison Mann; Ampersand; Yorick Brown; Agent 355; Toyota |
| 25 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | |
| 26 | Chapter Two | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Beth; Beth junior; Hero Brown; Natalya Zamyatin; Yorick Brown; Ampersand; Agent 355; Rose Copen; Dr. Allison Mann [Ayuko Matsumori]; You; Zumi; Epiphany; Dr. Matsumori |
| 27 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Ampersand |
| 28 | Chapter Three | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | President Margaret Valentine; Jennifer Brown; Yorick Brown; Ampersand; Agent 355; Rose Copen; Dr. Allison Mann [Ayuko Matsumori]; Dr. Matsumori; Zumi; Epiphany; You; Kurombo |
| 29 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Toyota; Ampersand |
| 30 | Conclusion | comic story | 23 | script: Brian K. Vaughan; pencils: Pia Guerra, Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Toyota; Dr. Allison Mann [Ayuko Matsumori]; Dr. Matsumori; Ampersand; Epiphany; Zumi; Rose Copen; President Margaret Valentine; Jennifer Brown; You; Hero Brown; Beth; Natalya Zamyatin; Ciba Weber; Vladimir Weber; Heather Hartle; Heidi Hartle; Alter Tse'Elon |
| 31 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Allison Mann |
| 32 | The Tin Man | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Dr. Allison Mann [Ayuko Matsumori]; Lt. Rose Copen; Mrs. Dr. Matsumori (flashback); Dr. Matsumori (flashback); Dr. Ming (flashback); Mercedes (flashback); Karla (flashback); Sunil (flashback) |
| 33 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Ampersand; Yorick Brown; General Alter Tse'Elon |
| 34 | Gehenna | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Heather Hartle; Heidi Hartle; General Alter Tse'Elon; Rachel Tse'Elon (flashback); Eyad (flashback); Lt. General Yehuda (flashback); Sadie (flashback) |
| 35 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Yorick Brown; Ampersand |
| 36 | Motherland | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Dr. Allison Mann [Ayuko Matsumori]; Lt. Rose Copen; Bonny (monkey); Beth Deville (dream); Hero Brown; Beth II; Beth, Jr.; Natalya Zamyatin; Dr. Ciba Weber; Vladimir Weber; Captain Belleville |
| 37 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Yorick Brown; Ampersand |
| 38 | Chapter Two | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Dr. Allison Mann [Ayuko Matsumori]; Lt. Rose Copen; Bonny (monkey); General Alter Tse'Elon; Eliana; Mrs. Dr. Matsumori; Dr. Matsumori; Dr. Ming (flashback); Ayuko Ni (clone of Allison Mann) |
| 39 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Lt. Rose Copen; Agent 355 |
| 40 | Chapter Three | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Dr. Allison Mann [Ayuko Matsumori]; Lt. Rose Copen; Mrs. Dr. Matsumori; Dr. Matsumori; Ayuko Ni (clone of Allison Mann); Toyota |
| 41 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Dr. Allison Mann [Ayuko Matsumori] |
| 42 | Conclusion | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Dr. Allison Mann [Ayuko Matsumori]; Lt. Rose Copen; Bonnie (monkey); Mrs. Dr. Matsumori; Dr. Matsumori (dies); Ayuko Ni (clone of Allison Mann); Toyota (dies); Hero Brown; Beth II; Beth, Jr.; Natalya Zamyatin; Dr. Ciba Weber; Vladimir Weber; Beth Deville |
| 43 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Waverly |
| 44 | The Obituarist | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: Goran Sudžuka, José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Waverly; Bobbi; President Margaret Valentine; Secretary Jennifer Brown (deceased) |
| 45 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Ampersand |
| 46 | Tragicomic | comic story | 22 | script: Brian K. Vaughan; pencils: Goran Sudžuka; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Edie; Cayce; Velvet; Henrietta |
| 47 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Yorick Brown; Agent 355; Ampersand |
| 48 | Whys and Wherefores | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Vladimir Lenin (corpse); Hero Brown; Beth II; Beth, Jr.; Natalya Zamyatin; Dr. Ciba Weber; Vladimir Weber; Beth Deville (dream); Lt. General Alter Tse'Elon; Eliana |
| 49 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Hero Brown; Natalya Zamyatin; Dr. Ciba Weber; Vladimir Weber |
| 50 | Chapter Two | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Hero Brown; Beth II; Beth, Jr.; Natalya Zamyatin; Dr. Ciba Weber; Vladimir Weber; Beth Deville; Lt. General Alter Tse'Elon; Eliana (death) |
| 51 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Ampersand; Beth Deville |
| 52 | Chapter Three | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355; Ampersand; Hero Brown; Beth II; Beth, Jr.; Beth Deville |
| 53 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Agent 355 |
| 54 | Chapter Four | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355 (death); Ampersand; Hero Brown; Beth II; Beth, Jr.; Natalya Zamyatin; Dr. Ciba Weber; Vladimir Weber; Beth Deville; Lt. General Alter Tse'Elon |
| 55 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Ampersand |
| 56 | Conclusion | comic story | 22 | script: Brian K. Vaughan; pencils: Pia Guerra; inks: José Marzán Jr.; colors: Zylonol; letters: Clem Robins | Yorick Brown; Agent 355 (corpse); Ampersand; Hero Brown; Beth II; Beth, Jr.; Natalya Zamyatin; Dr. Ciba Weber; Vladimir Weber; Beth Deville; Lt. General Alter Tse'Elon (real name revealed to be Yedida) |
| 57 | - | cover reprint (on interior page) | 1 | pencils: Massimo Carnevale; inks: Massimo Carnevale; colors: Massimo Carnevale | Yorick Brown |
| 58 | Alas | comic story | 48 | script: Brian K. Vaughan; pencils: Pia Guerra, Goran Sudžuka; inks: José Marzán Jr.; colors: Lee Loughridge; letters: Clem Robins | Yorick Brown; Dr. Allison Mann [Ayuko Matsumori] (flashback); Agent 355 (flashback); Yorick Brown the Seventeenth (clone); Catherine; Ampersand (death); Hero Brown; President Beth, Jr.; Rose Copen; Dr. Allison Mann (clones); Beth Deville |