| 0 | - | cover | 1 | pencils: Sophie Campbell; inks: Sophie Campbell | |
| 1 | - | credits, title page | 3 | letters: typeset | |
| 2 | City at War, Part 4 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Michael Dialynas; inks: Michael Dialynas; colors: Ronda Pattison; letters: Shawn Lee | Donatello; Jennika; Leonardo; Herman; Lindsey Baker; Old Hob; Raphael; Sally Pride; Ocho; Oroku Karai; Casey Jones; Hun; Link; Malo; Splinter; Alopex; April O'Neil; Antonio Puzorelli; Baxter Stockman; Big Louie; Bludgeon; Don Turtelli; Mongo; Yumiko; Koya; Krisa; Michelangelo; Natsu; Angel Bridge; N |
| 3 | Teenage Mutant Ninja Turtles #96 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell | |
| 4 | Teenage Mutant Ninja Turtles #97 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter | |
| 5 | City at War, Part 5 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Michael Dialynas; inks: Michael Dialynas; colors: Ronda Pattison; letters: Shawn Lee | Alopex; Angel Bridge; Bludgeon; Brooklyn S. Bridge; Casey Jones; Donatello; Harold Lilja; Hun; Jennika; Koya; Leonardo; Libby Meitner; Metalhead; Mongo; Natsu; Ocho; Splinter; Yumiko; John Bishop; Lindsey Baker; Sarge; Pepperoni |
| 6 | Teenage Mutant Ninja Turtles #97 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Fahriza Kamaputra | |
| 7 | Teenage Mutant Ninja Turtles #98 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter | |
| 8 | City at War, Part 6 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Michael Dialynas; inks: Michael Dialynas; colors: Ronda Pattison; letters: Shawn Lee | April O'Neil; Baxter Stockman; Hun; John Bishop; Karai; Donatello; Jennika; Leonardo; Man Ray; Michelangelo; Old Hob; Raphael; Alopex; Angel Bridge; Casey Jones; Hernandez; Kara Lewis; Lindsey Baker; Mondo Gecko; Noah; Pepperoni; Rat King; Sally Pride; Splinter; Tang Shen |
| 9 | Teenage Mutant Ninja Turtles #98 Kevin Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Fahriza Kamaputra | |
| 10 | Teenage Mutant Ninja Turtles #99 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter | |
| 11 | City at War, Part 7 | comic story | 40 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Dave Wachter; inks: Dave Wachter; colors: Ronda Pattison; letters: Shawn Lee | Hun; Bludgeon; Bebop; Donatello; Harold Lilja; John Bishop; Kitsune; Koya; Leonardo; Libby Meitner; Metalhead; Michelangelo; Old Hob; Rat King; Rocksteady; Splinter; Alopex; Anchovy; Colbert; Dr. Yuhasz; Herman; Kara Lewis; Man Ray; Mondo Gecko; Angel Bridge; Ocho; Oroku Karai; Pigeon Pete; Raphael; |
| 12 | Teenage Mutant Ninja Turtles #100 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter | |
| 13 | City at War, The End | comic story | 42 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Dave Wachter, Michael Dialynas, Mateus Santolouco, Adam Gorham, Dan Duncan, Cory Smith; inks: Dave Wachter, Michael Dialynas, Mateus Santolouco, Adam Gorham, Dan Duncan, Cory Smith; colors: Ronda Pattison, Bill Crabtree; letters: Shawn Lee | Alopex; Anchovy; Hun; Bebop; Casey Jones; Donatello; Dragon; Kitsune; Leonardo; Jennika; John Bishop; Michelangelo; Angel Bridge; Ocho; Oroku Karai; Shredder; Raphael; Rocksteady; Splinter; April O'Neil; Bludgeon; Tommy; Beth O'Neil; Harold Lilja; John O'Neil; Krang; Leatherhead; Koya; Libby Meitner |
| 14 | Teenage Mutant Ninja Turtles #100 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Tomi Varga | |
| 15 | Teenage Mutant Ninja Turtles #96 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter | |
| 16 | Teenage Mutant Ninja Turtles #96 Sophie Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell | |
| 17 | Teenage Mutant Ninja Turtles #97 Cory Smith Variant Cover | cover reprint (on interior page) | 1 | pencils: Cory Smith; inks: Cory Smith | |
| 18 | Teenage Mutant Ninja Turtles #98 Michael Dialynas Variant Cover | cover reprint (on interior page) | 1 | pencils: Michael Dialynas; inks: Michael Dialynas | |
| 19 | Teenage Mutant Ninja Turtles #99 Valerio Schiti Variant Cover | cover reprint (on interior page) | 1 | pencils: Valerio Schiti; inks: Valerio Schiti | |
| 20 | Teenage Mutant Ninja Turtles #100 Mateus Santolouco Variant Cover | cover reprint (on interior page) | 1 | pencils: Santolouco; inks: Santolouco; colors: Santolouco | |
| 21 | Teenage Mutant Ninja Turtles #100 Freddie Williams Variant Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II | |
| 22 | Teenage Mutant Ninja Turtles #100 Peter Laird and Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Peter Laird, Kevin Eastman; inks: Peter Laird, Kevin Eastman | |
| 23 | Teenage Mutant Ninja Turtles #97 Craig Rousseau Variant Cover | cover reprint (on interior page) | 1 | pencils: Craig Rousseau; inks: Craig Rousseau | |
| 24 | Teenage Mutant Ninja Turtles #98 Jae Lee Variant Cover | cover reprint (on interior page) | 1 | pencils: Jae Lee; inks: Jae Lee; colors: June Chung | |
| 25 | Teenage Mutant Ninja Turtles #100 Bill McKay Variant Cover | cover reprint (on interior page) | 1 | pencils: Bill McKay; inks: Bill McKay | |
| 26 | Teenage Mutant Ninja Turtles #99 Kael Ngu Variant Cover | cover reprint (on interior page) | 1 | pencils: Kael Ngu; inks: Kael Ngu | |