| 0 | - | cover | 1 | pencils: Dan Duncan; inks: Dan Duncan; colors: Dan Duncan | |
| 1 | - | credits, title page | 3 | letters: typeset | |
| 2 | - | table of contents | 2 | letters: typeset | |
| 3 | Teenage Mutant Ninja Turtles Macroseries #2 Cover | cover reprint (on interior page) | 1 | pencils: David Petersen; inks: David Petersen; colors: David Petersen | Michelangelo |
| 4 | - | comic story | 40 | script: Ian Flynn; pencils: Michael Dialynas; inks: Michael Dialynas; colors: Michael Dialynas; letters: Shawn Lee | Donatello; Jennika; Splinter; Leonardo; Michelangelo; Aka; Darius Dun; Hamato Yoshi; Kitsune; Rat King; Zom |
| 5 | Teenage Mutant Ninja Turtles Macroseries #2 Michael Dialynas Variant Cover | cover reprint (on interior page) | 1 | pencils: Michael Dialynas; inks: Michael Dialynas; colors: Michael Dialynas | |
| 6 | Teenage Mutant Ninja Turtles Universe #23 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Jeremy Colwell | |
| 7 | ...And Out Came the Reptiles, part 1 | comic story | 20 | script: Ryan Ferrier; pencils: Pablo Tunica; inks: Pablo Tunica; colors: Patricio Delpeche; letters: Shawn Lee | Lindsey Baker; John Bishop; Michelangelo; Mondo Gecko |
| 8 | Teenage Mutant Ninja Turtles Universe #23 Pablo Tunica Variant Cover | cover reprint (on interior page) | 1 | pencils: Pablo Tunica; inks: Pablo Tunica; colors: Pablo Tunica | |
| 9 | Teenage Mutant Ninja Turtles Universe #24 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Jeremy Colwell | |
| 10 | ...And Out Came the Reptiles, Part 2 | comic story | 20 | script: Ryan Ferrier; pencils: Pablo Tunica; inks: Pablo Tunica; colors: Patricio Delpeche; letters: Shawn Lee | Lindsey Baker; John Bishop; Old Hob; Michelangelo; Mondo Gecko; Seymour Gutz; Herman the Hermit Crab; Pete |
| 11 | Teenage Mutant Ninja Turtles Universe #24 Pablo Tunica Variant Cover | cover reprint (on interior page) | 1 | pencils: Pablo Tunica; inks: Pablo Tunica; colors: Pablo Tunica | |
| 12 | Teenage Mutant Ninja Turtles #85 David O'Sullivan Variant Cover | cover reprint (on interior page) | 1 | pencils: David O'Sullivan; inks: David O'Sullivan; colors: David O'Sullivan | |
| 13 | Life at Sea | comic story | 4 | script: Rich Douek; pencils: Buster Moody; inks: Buster Moody; colors: Buster Moody; letters: Shawn Lee | Pete; Man Ray; Herman the Hermit Crab; Captain Hobb; Mondo Gecko; Bosun Pride; Slash |
| 14 | Teenage Mutant Ninja Turtles Universe #25 Tom Velez Variant Cover | cover reprint (on interior page) | 1 | pencils: Tom Velez; inks: Tom Velez; colors: Tom Velez | |
| 15 | Teenage Mutant Ninja Turtles #85 Cover | cover reprint (on interior page) | 1 | pencils: Brahm Revel; inks: Brahm Revel; colors: Brahm Revel | Leatherhead; Teenage Mutant Ninja Turtles |
| 16 | - | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Brahm Revel; inks: Brahm Revel; colors: Ronda Pattison; letters: Shawn Lee | Donatello; Krang; Leatherhead; Leonardo; Michelangelo; Raphael; April O'Neil; Baxter Stockman; Casey Jones; John Bishop; Slash; Jennika; Mary; Steven |
| 17 | Teenage Mutant Ninja Turtles #85 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Tomi Varga | |
| 18 | Teenage Mutant Ninja Turtles Universe #25 Cover | cover reprint (on interior page) | 1 | pencils: Freddie Williams II; inks: Freddie Williams II; colors: Jeremy Colwell | |
| 19 | Spirit Walk | comic story | 24 | script: Ian Flynn; pencils: Nelson Dániel; inks: Nelson Dániel; colors: Nelson Dániel; letters: Shawn Lee | Teenage Mutant Ninja Turtles [Raphael; Michelangelo; Donatello; Leonardo]; Dan; Kitsune; Shredder; Aka; Manmoth; Rat King; Toad Baron |
| 20 | Teenage Mutant Ninja Turtles Universe #25 Nelson Daniel Variant Cover | cover reprint (on interior page) | 1 | pencils: Nelson Dániel; inks: Nelson Dániel; colors: Nelson Dániel | Teenage Mutant Ninja Turtles [Raphael; Michelangelo; Donatello; Leonardo] |
| 21 | Teenage Mutant Ninja Turtles #86 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter; colors: Dave Wachter | |
| 22 | Battle Lines, Part 1 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Dave Wachter; inks: Dave Wachter; colors: Ronda Pattison; letters: Shawn Lee | Donatello; John Bishop; Captain Mitchell; Slash; Leonardo; Adviser Ma'riell; Michelangelo; Raphael; Corporal Sherp; Commander Zom; Alopex; Angel Bridge; April O'Neil; Baxter Stockman; Casey Jones; Ch'rell; Churk; Corporal Montuoro; Irma Langenstein; Jennika; Lieutenant Kleve; Lieutenant Tragg; Leesh |
| 23 | Teenage Mutant Ninja Turtles #86 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Tomi Varga | |
| 24 | Teenage Mutant Ninja Turtles #87 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter; colors: Dave Wachter | |
| 25 | Battle Lines, Part 2 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Dave Wachter; inks: Dave Wachter; colors: Ronda Pattison; letters: Shawn Lee | Marie Bishop; Ch'rell; Donatello; John Bishop; Wayne Bishop; Captain Mitchell; Slash; Leonardo; Michelangelo; Lindsey Baker; Herman the Hermit Crab; Old Hob; Man Ray; Mondo Gecko; Seymour Gutz; Raphael; Granitor; Lieutenant Kleve; Ma'riell; April O'Neil; Corporal Sherp; Lieutenant Tragg; Dr. Yuhasz; |
| 26 | Teenage Mutant Ninja Turtles #87 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Tomi Varga | |
| 27 | Teenage Mutant Ninja Turtles #88 Cover | cover reprint (on interior page) | 1 | pencils: Dave Wachter; inks: Dave Wachter; colors: Dave Wachter | |
| 28 | Battle Lines, Part 3 | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Dave Wachter; inks: Dave Wachter; colors: Ronda Pattison; letters: Shawn Lee | Ch'rell; Donatello; John Bishop; Leonardo; Michelangelo; Herman; Old Hob; Mondo Gecko; Pete; Man Ray; Sally Pride; Slash; Raphael; Zom; Dr. Yuhasz; Sherp; Wayne Bishop |
| 29 | Teenage Mutant Ninja Turtles #88 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Tomi Varga | |
| 30 | Bebop & Rocksteady Hit the Road #1 Cover | cover reprint (on interior page) | 1 | pencils: Nick Pitarra; inks: Nick Pitarra; colors: Michael Garland | Bebop; Rocksteady; Wingnut |
| 31 | Hit the Road | comic story | 20 | script: Ben Bates, Dustin Weaver; pencils: Ben Bates; inks: Ben Bates; colors: Brittany Peer; letters: Shawn Lee | Bebop; Rocksteady; Wingnut: Special Agent Ravenwood; Hector Barrales |
| 32 | Bebop & Rocksteady Hit the Road #1 Ben Bates Variant Cover | cover reprint (on interior page) | 1 | pencils: Ben Bates; inks: Ben Bates; colors: Ben Bates | |
| 33 | Bebop & Rocksteady Hit the Road #2 Cover | cover reprint (on interior page) | 1 | pencils: Nick Pitarra; inks: Nick Pitarra; colors: Michael Garland | Bebop; Rocksteady; Wingnut |
| 34 | - | comic story | 20 | script: Ben Bates, Dustin Weaver; pencils: Ben Bates; inks: Ben Bates; colors: Brittany Peer; letters: Shawn Lee | Bebop; Xiang Fei Tong; Rocksteady; Ravenwood; Anchovy; Bobby Browder; Razzmatazz; Joe |
| 35 | Bebop & Rocksteady Hit the Road #2 Dustin Weaver Variant Cover | cover reprint (on interior page) | 1 | pencils: Dustin Weaver; inks: Dustin Weaver; colors: Dustin Weaver | |
| 36 | Bebop & Rocksteady Hit the Road #3 Cover | cover reprint (on interior page) | 1 | pencils: Nick Pitarra; inks: Nick Pitarra; colors: Michael Garland | Bebop; Rocksteady; Wingnut |
| 37 | - | comic story | 20 | script: Ben Bates, Dustin Weaver; pencils: Dustin Weaver; inks: Dustin Weaver; colors: Brittany Peer; letters: Shawn Lee | Bebop; RockSteady; Savanti Romero; Special Agent Ravenwood; Maxence; Discordance |
| 38 | Bebop & Rocksteady Hit the Road #3 Ryan Browne Variant Cover | cover reprint (on interior page) | 1 | pencils: Ryan Browne; inks: Ryan Browne; colors: Ryan Browne | Bebop; RockSteady |
| 39 | Bebop & Rocksteady Hit the Road #4 Cover | cover reprint (on interior page) | 1 | pencils: Nick Pitarra; inks: Nick Pitarra; colors: Michael Garland | Bebop; Rocksteady; Wingnut |
| 40 | - | comic story | 20 | script: Ben Bates, Dustin Weaver; pencils: Dustin Weaver; inks: Dustin Weaver; colors: Brittany Peer; letters: Shawn Lee | Bebop; John Bishop; Bobby Browder; Ravenwood; T.J. Shevlin; Razzmatazz; Rocksteady; Anchovy; Xiang Fei Tong |
| 41 | Bebop & Rocksteady Hit the Road #4 Kyle Strahm Variant Cover | cover reprint (on interior page) | 1 | pencils: Kyle Strahm; inks: Kyle Strahm; colors: Kyle Strahm | |
| 42 | Bebop & Rocksteady Hit the Road #5 Cover | cover reprint (on interior page) | 1 | pencils: Nick Pitarra; inks: Nick Pitarra; colors: Michael Garland | Bebop; Rocksteady; Wingnut |
| 43 | - | comic story | 20 | script: Ben Bates, Dustin Weaver; pencils: Ben Bates; inks: Ben Bates; colors: Brittany Peer; letters: Shawn Lee | |
| 44 | Bebop & Rocksteady Hit the Road #5 Ben Bates Variant Cover | cover reprint (on interior page) | 1 | pencils: Ben Bates; inks: Ben Bates; colors: Ben Bates | |
| 45 | Teenage Mutant Ninja Turtles Macroseries #3 Cover | cover reprint (on interior page) | 1 | pencils: David Petersen; inks: David Petersen; colors: David Petersen | Leonardo |
| 46 | - | comic story | 40 | script: Sophie Campbell; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Brittany Peer; letters: Shawn Lee | Donatello; Leonardo; Michelangelo; Koya; Oroku Karai; Raphael; Bludgeon; Natsu; Ocho; Pepperoni |
| 47 | Teenage Mutant Ninja Turtles Macroseries #3 Sophie Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Sophie Campbell; inks: Sophie Campbell; colors: Sophie Campbell | Leonardo |
| 48 | Teenage Mutant Ninja Turtles #89 Cover | cover reprint (on interior page) | 1 | pencils: Michael Dialynas; inks: Michael Dialynas; colors: Michael Dialynas | |
| 49 | - | comic story | 20 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Michael Dialynas; inks: Michael Dialynas; colors: Ronda Pattison; letters: Shawn Lee | Aka; Gothano; Donatello; Leonardo; Michelangelo; Raphael; Splinter; The Shredder; Toad Baron; Jennika; Casey Jones; Harold Lilja; Libby Meitner; Tommy; Slash; Tang Shen |
| 50 | Teenage Mutant Ninja Turtles #89 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Tomi Varga | |
| 51 | Teenage Mutant Ninja Turtles Macroseries #2 Ryan Brown Variant Cover | cover reprint (on interior page) | 1 | pencils: Ryan Brown; inks: Ryan Brown; colors: Ryan Brown | Michelangelo |
| 52 | Teenage Mutant Ninja Turtles Macroseries #3 Ryan Brown Variant Cover | cover reprint (on interior page) | 1 | pencils: Ryan Brown; inks: Ryan Brown; colors: Ryan Brown | |
| 53 | Teenage Mutant Ninja Turtles #86 Comics and Ponies Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Charlie Kirchoff | |
| 54 | Teenage Mutant Ninja Turtles #87 Michael Dowling Variant Cover | cover reprint (on interior page) | 1 | pencils: Michael Dowling; inks: Michael Dowling; colors: Michael Dowling | |
| 55 | Teenage Mutant Ninja Turtles #88 Alexa Pasztor Variant Cover | cover reprint (on interior page) | 1 | pencils: Alexa Pasztor (credited); inks: Alexa Pasztor (credited); colors: Alexa Pasztor (credited); letters: typeset | |
| 56 | Teenage Mutant Ninja Turtles #89 Jody Edwards Variant Cover | cover reprint (on interior page) | 1 | pencils: Jody Edwards (credited); inks: Jody Edwards (credited); colors: Jody Edwards (credited); letters: typeset | |
| 57 | - | illustration | 1 | | |
| 58 | - | illustration | 1 | letters: typeset | |