| 0 | - | cover | 1 | pencils: Dan Duncan; inks: Dan Duncan; colors: Dan Duncan | |
| 1 | - | credits, title page | 5 | letters: typeset | |
| 2 | - | table of contents | 2 | letters: typeset | |
| 3 | Teenage Mutant Ninja Turtles: Turtles in Time #1 Cover | cover reprint (on interior page) | 1 | pencils: David Petersen; inks: David Petersen; colors: David Petersen | |
| 4 | - | comic story | 22 | script: Paul Allor; pencils: Sophie Campbell; inks: Sophie Campbell; colors: Bill Crabtree; letters: Shawn Lee | Donatello; Leonardo; Michelangelo; Pepperoni; Raphael; Renet; Churk; Yoom |
| 5 | Teenage Mutant Ninja Turtles: Turtles in Time #1 Ross Campbell Variant Cover | cover reprint (on interior page) | 1 | pencils: Ross Campbell; inks: Ross Campbell; colors: Ross Campbell | |
| 6 | Teenage Mutant Ninja Turtles: Turtles in Time #2 Cover | cover reprint (on interior page) | 1 | pencils: David Petersen; inks: David Petersen; colors: David Petersen | |
| 7 | - | comic story | 22 | script: Erik Burnham; pencils: Charles Paul Wilson III; inks: Charles Paul Wilson III; colors: Jeremy Mohler; letters: Shawn Lee | Donatello; Leonardo; Michelangelo; Raphael; Hamato Yoshi; Kitsune; Shredder; Tang Shen; Renet Tilley |
| 8 | Teenage Mutant Ninja Turtles: Turtles in Time #2 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Charles Paul Wilson III; inks: Charles Paul Wilson III; colors: Jeremy Mohler | |
| 9 | Teenage Mutant Ninja Turtles: Turtles in Time #3 Cover | cover reprint (on interior page) | 1 | pencils: David Petersen; inks: David Petersen; colors: David Petersen | |
| 10 | - | comic story | 22 | script: Erik Burnham; pencils: Ben Bates; inks: Ben Bates; colors: Ben Bates; letters: Shawn Lee | Donatello; Leonardo; Michelangelo; Raphael; Renet Tilley; Rhodes; Krang; Leatherhead |
| 11 | Teenage Mutant Ninja Turtles: Turtles in Time #3 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Ben Bates; inks: Ben Bates; colors: Ben Bates | |
| 12 | Teenage Mutant Ninja Turtles: Turtles in Time #4 Cover | cover reprint (on interior page) | 1 | pencils: David Petersen; inks: David Petersen; colors: David Petersen | |
| 13 | - | comic story | 22 | script: Paul Allor; pencils: Dan Duncan; inks: Dan Duncan; colors: Ronda Pattison; letters: Shawn Lee | Donatello; Woody Dirkins; Leonardo; Michelangelo; Raphael; Renet Tilly |
| 14 | Teenage Mutant Ninja Turtles: Turtles in Time #4 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Dan Duncan; inks: Dan Duncan; colors: Dan Duncan | |
| 15 | Teenage Mutant Ninja Turtles #38 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | Old Hob |
| 16 | New Mutant Order, Part 2 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | April O'Neil; Casey Jones; Donatello; Beth O'Neil; Genealdo; Herman the Hermit Crab; John O'Neil; Harold Lillja; Leonardo; Lindsey Baker; Maxence; Michelangelo; Mondo Gecko; Angel Bridge; Old Hob; Pigeon Pete; Raphael; Slash; Splinter |
| 17 | Teenage Mutant Ninja Turtles #38 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 18 | Teenage Mutant Ninja Turtles #39 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | Slash; Bebop; Rocksteady |
| 19 | New Mutant Order, Part 3 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | Alopex; Bebop; Herman; Leonardo; Michelangelo; Mondo Gecko; Angel Bridge; Old Hob; Raphael; Rocksteady; Splinter; Bludgeon; Casey Jones; Donatello; John O'Neil; Karai; Koya; Metalhead; Pete; Slash; Shredder |
| 20 | Teenage Mutant Ninja Turtles #39 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 21 | Teenage Mutant Ninja Turtles #40 Cover | cover reprint (on interior page) | 1 | pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Mateus Santolouco | |
| 22 | New Mutant Order, Part 4 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Mateus Santolouco; inks: Mateus Santolouco; colors: Ronda Pattison; letters: Shawn Lee | Rocksteady; Michelangelo; Raphael; Bebop; Slash; Old Hob; Herman; Leonardo; Alopex; Angel Bridge; John O'Neil; Casey Jones |
| 23 | Teenage Mutant Ninja Turtles #40 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 24 | Teenage Mutant Ninja Turtles / Ghostbusters #1 Cover | cover reprint (on interior page) | 1 | pencils: Dan Schoening; inks: Dan Schoening; colors: Luis Antonio Delgado | |
| 25 | - | comic story | 22 | script: Erik Burnham, Tom Waltz; pencils: Charles Paul Wilson III, Cory Smith, Dan Schoening; inks: Charles Paul Wilson III, Cory Smith, Dan Schoening; colors: Luis Antonio Delgado, Ronda Pattison; letters: Neil Uyetake | Kitsune; Rat King; Chi-You; Krang; Raphael; Donatello; Casey Jones; Leonardo; Michelangelo; April O'Neil; Harold Lilja; Splinter; Egon Spengler; Peter Venkman; Ray Stantz; Winston Zeddemore; Kylie Griffin; Janine Melnitz; Slimer; Lucy |
| 26 | Teenage Mutant Ninja Turtles / Ghostbusters #1 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 27 | Teenage Mutant Ninja Turtles / Ghostbusters #2 Cover | cover reprint (on interior page) | 1 | pencils: Dan Schoening; inks: Dan Schoening; colors: Luis Antonio Delgado | |
| 28 | - | comic story | 22 | script: Erik Burnham, Tom Waltz; pencils: Dan Schoening; inks: Dan Schoening; colors: Luis Antonio Delgado; letters: Neil Uyetake | Chi-You; Ray Stantz; Peter Venkman; Winston Zeddemore; Egon Spengler; Raphael; Casey Jones; Michelangelo; Donatello; Leonardo; April O’Neil; Slimer; Janine Melnitz; Kylie Griffin |
| 29 | Teenage Mutant Ninja Turtles / Ghostbusters #2 Shannon Ritchie Variant Cover | cover reprint (on interior page) | 1 | pencils: Shannon Ritchie; inks: Shannon Ritchie; colors: Paris Alleyne | |
| 30 | Teenage Mutant Ninja Turtles / Ghostbusters #3 Cover | cover reprint (on interior page) | 1 | pencils: Dan Schoening; inks: Dan Schoening; colors: Luis Antonio Delgado | |
| 31 | - | comic story | 22 | script: Erik Burnham, Tom Waltz; pencils: Dan Schoening; inks: Dan Schoening; colors: Luis Antonio Delgado; letters: Neil Uyetake | Michelangelo; Winston Zeddemore; Ray Stantz; Leonardo; Raphael; Egon Spengler; Peter Venkman; Donatello; Chi-You; Casey Jones; Kylie Griffin; Janine Melnitz; April O’Neil |
| 32 | Teenage Mutant Ninja Turtles / Ghostbusters #3 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Cory Smith; inks: Cory Smith; colors: Cory Smith | |
| 33 | Teenage Mutant Ninja Turtles / Ghostbusters #4 Cover | cover reprint (on interior page) | 1 | pencils: Dan Schoening; inks: Dan Schoening; colors: Luis Antonio Delgado | |
| 34 | - | comic story | 22 | script: Erik Burnham, Tom Waltz; pencils: Dan Schoening; inks: Dan Schoening; colors: Luis Antonio Delgado; letters: Neil Uyetake | Egon Spengler; Donatello; April O’Neil; Ray Stantz; Kylie Griffin; Raphael; Winston Zeddemore; Leonardo; Peter Venkman; Michelangelo; Janine Melnitz; Chi-You; Casey Jones; Splinter |
| 35 | Teenage Mutant Ninja Turtles / Ghostbusters #4 Subscription Cover | cover reprint (on interior page) | 1 | pencils: Robert Atkins; inks: Robert Atkins; colors: Simon Gough | |
| 36 | Teenage Mutant Ninja Turtles #41 Cover | cover reprint (on interior page) | 1 | pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison | Teenage Mutant Ninja Turtles [Leonardo; Raphael; Donatello; Michelangelo] |
| 37 | Attack on Technodrome, Part 1 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison; letters: Shawn Lee | Donatello; Leonardo; Fugitoid; Herman; Krang; Metalhead; Michelangelo; Mondo Gecko; Raphael; Slash; Splinter; Bebop; Bludgeon; Casey Jones; Karai; Koya; Harold Lilja; April O'Neil; The Shredder; Rocksteady; Baxter Stockman |
| 38 | Teenage Mutant Ninja Turtles #41 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 39 | Teenage Mutant Ninja Turtles #42 Cover | cover reprint (on interior page) | 1 | pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison | |
| 40 | Attack on Technodrome, Part 2 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison; letters: Shawn Lee | Donatello; Splinter; Herman the Hermit Crab; Old Hob; Fugitoid; Krang; Leonardo; Michelangelo; Mondo Gecko; The Shredder; Raphael; Pete; Slash; Bebop; Bludgeon; Granitor; Koya; Patrick Miller; April O'Neil; Oroku Karai; Rocksteady; Baxter Stockman; Tragg |
| 41 | Teenage Mutant Ninja Turtles #42 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 42 | Teenage Mutant Ninja Turtles #43 Cover | cover reprint (on interior page) | 1 | pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison | Teenage Mutant Ninja Turtles [Leonardo; Raphael; Donatello; Michelangelo] |
| 43 | Attack on Technodrome, Part 3 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison; letters: Shawn Lee | Donatello; Leonardo; Michelangelo; Raphael; Splinter; Bebop; Bludgeon; Hun; Karai; Koya; Rocksteady; Shredder; Baxter Stockman; Flyborg; Granitor; Honeycutt; Krang; Tragg; Herman; Old Hob; Mondo Gecko; Pigeon Pete; Slash; Harold Lilja |
| 44 | Teenage Mutant Ninja Turtles #43 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 45 | Teenage Mutant Ninja Turtles #44 Cover | cover reprint (on interior page) | 1 | pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison | Shredder; General Krang |
| 46 | Attack on Technodrome, Part 4 | comic story | 22 | script: Kevin Eastman, Bobby Curnow, Tom Waltz; pencils: Cory Smith; inks: Cory Smith; colors: Ronda Pattison; letters: Shawn Lee | Teenage Mutant Ninja Turtles [Donatello; Leonardo; Michelangelo; Raphael]; Alopex; Angel Bridge; Baxter Stockman; Bebop; Bludgeon; Karai; Koya; Shredder; Harold Lilja; Krang; Metalhead; Dask; Granitor; Tragg |
| 47 | Teenage Mutant Ninja Turtles #44 Kevin Eastman Variant Cover | cover reprint (on interior page) | 1 | pencils: Kevin Eastman; inks: Kevin Eastman; colors: Ronda Pattison | |
| 48 | Teenage Mutant Ninja Turtles #39 Ulises Farinas Variant Cover | cover reprint (on interior page) | 1 | pencils: Ulises Fariñas; inks: Ulises Fariñas; colors: Ulises Fariñas | |
| 49 | Teenage Mutant Ninja Turtles #44 Tadd Galusha Variant Cover | cover reprint (on interior page) | 1 | pencils: Tadd Galusha; inks: Tadd Galusha; colors: Tadd Galusha | |
| 50 | - | illustration | 3 | letters: typeset | |
| 51 | - | illustration | 1 | letters: typeset | |