| 0 | - | cover | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | Deathlok [Henry Hayes]; Mockingbird [Bobbi Morse]; Quake [Daisy Johnson; Skye]; Agent Melinda May; Agent Phil Coulson; Agent Leo Fitz; Agent Jemma Simmons; Iron Man |
| 1 | The Coulson Protocols | comic story | 8 | script: Marc Guggenheim; pencils: Germán Peralta; inks: Germán Peralta; colors: Chris Sotomayor; letters: VC, Joe Caramagna; editing: Katie Kubert, Jon Moisan | S.H.I.E.L.D. [Phil Coulson] |
| 2 | 1. Active Mission: Lola | cover reprint (on interior page) | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | Deathlok [Henry Hayes]; Mockingbird [Bobbi Morse]; Quake [Daisy Johnson; Skye]; Agent Melinda May; Agent Phil Coulson; Agent Leo Fitz; Agent Jemma Simmons; Iron Man |
| 3 | The Coulson Protocols Episode One: Lola | comic story | 20 | script: Marc Guggenheim; pencils: Germán Peralta; inks: Germán Peralta; colors: Rachelle Rosenberg; letters: VC, Joe Caramagna | Grant Ward; Melinda May; Iron Man [Tony Stark]; Phil Coulson; Leo Fitz; Quake [Daisy Johnson]; Mockingbird [Bobbi Morse]; Deathlok [Henry Hayes]; Jemma Simmons; Lola Daniels |
| 4 | 2. Active Mission: Dangerous Liaisons | cover reprint (on interior page) | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | Agent Phil Coulson |
| 5 | The Coulson Protocols Episode Two: Dangerous Liaisons | comic story | 20 | script: Marc Guggenheim; pencils: Germán Peralta; inks: Germán Peralta; colors: Rachelle Rosenberg; letters: VC, Joe Caramagna | S.H.I.E.L.D. [Phil Coulson; Lola Daniels; Quake [Daisy Johnson]; Melinda May; Deathlok [Henry Hayes]; Jemma Simmons; Leo Fitz]; Horus [Tarik Fayad]; Grant Ward; Mockingbird [Bobbi Morse]; Iron Maiden [Melina Vostokoff] |
| 6 | 3. Active Mission: Free Fall | cover reprint (on interior page) | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | S.H.I.E.L.D. [Quake [Daisy Johnson]; Agent Melinda May; Deathlok [Henry Hayes]] |
| 7 | The Coulson Protocols Episode Three: Free Fall | comic story | 20 | script: Marc Guggenheim; pencils: Germán Peralta; inks: Germán Peralta; colors: Rachelle Rosenberg; letters: VC, Joe Caramagna | S.H.I.E.L.D. [Mockingbird [Bobbi Morse]; Leo Fitz; Melinda May; Phil Coulson; Lola Daniels; Quake [Daisy Johnson]; Deathlok [Henry Hayes]]; Rick Jones; Jemma Simmons; New Avengers [White Tiger [Ava Ayala]; Songbird [Melissa Gold]; Power Man [Victor Alvarez]; Pod [Aikku Jokinen] |
| 8 | 4. Active Mission: Reversals of Fortune | cover reprint (on interior page) | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | Mockingbird [Bobbi Morse]; Songbird [Melissa Gold] |
| 9 | The Coulson Protocols Episode Four: Reversals of Fortune | comic story | 20 | script: Marc Guggenheim; pencils: Germán Peralta; inks: Germán Peralta; colors: Rachelle Rosenberg; letters: VC, Joe Caramagna | S.H.I.E.L.D. [Deathlok [Henry Hayes]; Quake [Daisy Johnson]; Agent Jemma Simmons; Field Director Phil Coulson (Impersonating Wolverine); Agent Melinda May; Mockingbird [Bobbi Morse]; Agent Leo Fitz]; Grant Ward |
| 10 | 5. Active Mission: Shanghaied | cover reprint (on interior page) | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | S.H.I.E.L.D. [Deathlok [Henry Hayes]; Phil Coulson; Melinda May; Quake [Daisy Johnson]]; Spider-Man [Peter Parker] |
| 11 | The Coulson Protocols Episode Five: Shanghaied | comic story | 20 | script: Marc Guggenheim; pencils: Germán Peralta; inks: Germán Peralta; colors: Rachelle Rosenberg; letters: VC, Joe Caramagna | Grant Ward; S.H.I.E.L.D. [Phil Coulson; Maria Hill; Deathlok [Henry Hayes]; Jemma Simmons; Melinda May; Mockingbird [Bobbi Morse]; Quake [Daisy Johnson]; Lola Daniels]; Gorgon; Hydra; Spider-Man [Peter Parker]; Leo Fitz; Daredevil [Matt Murdock]; Avengers [Iron Man [Tony Stark]; Captain America [Ste |
| 12 | 6. Active Mission: Unintended Consequences | cover reprint (on interior page) | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | Grant Ward; S.H.I.E.L.D. [Melinda May; Phil Coulson; Deathlok [Henry Hayes]]; Captain America [Sam Wilson]; Iron Man [Tony Stark]; Captain Marvel [Carol Danvers]; Hulk [Amadeus Cho]; She-Hulk [Jennifer Walters]; Medusa |
| 13 | The Coulson Protocols Episode Six: Unintended Consequences | comic story | 20 | script: Marc Guggenheim; pencils: Germán Peralta; inks: Germán Peralta; colors: Rachelle Rosenberg; letters: VC, Joe Caramagna | Captain America [Sam Wilson]; S.H.I.E.L.D. [Melinda May; Phil Coulson; Lola Daniels; Jemma Simmons; Leo Fitz; Quake [Daisy Johnson]; Grant Ward; Mockingbird [Bobbi Morse]]; Gorgon; Hydra; Iron Man [Tony Stark]; Captain Marvel [Carol Danvers]; Spider-Man [Peter Parker]; Hulk [Amadeus Cho]; She-Hulk [ |
| 14 | 1 Deadpool Variant Cover File | cover reprint (on interior page) | 1 | pencils: Mark Bagley; inks: Drew Hennessy; colors: Frank Martin | Agent Phil Coulson; Deadpool |
| 15 | 1 Hip Hop Variant Cover File | cover reprint (on interior page) | 1 | pencils: Dave Johnson; inks: Dave Johnson; colors: Dave Johnson | Agent Phil Coulson |
| 16 | 2 Variant Cover File | cover reprint (on interior page) | 1 | pencils: Tim Seeley; inks: Tim Seeley; colors: Jason Keith | Agent Phil Coulson; Lola; Iron Man |
| 17 | 3 Variant Cover File | cover reprint (on interior page) | 1 | pencils: Otto Schmidt; inks: Otto Schmidt; colors: Otto Schmidt | S.H.I.E.L.D. [Phil Coulson] |
| 18 | Cover Sketches by Mike Norton | illustration | 2 | pencils: Mike Norton | |
| 19 | Mockingbird Character Design | illustration | 1 | pencils: Giuseppe Camuncoli | |
| 20 | Agents of S.H.I.E.L.D. | promo (ad from the publisher) | 1 | pencils: Mike Norton; inks: Mike Norton; colors: FCO Plascencia | S.H.I.E.L.D. [Deathlok [Henry Hayes]; Phil Coulson; Melinda May; Quake [Daisy Johnson]]; Spider-Man [Peter Parker] |