| 0 | - | cover | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet | Punisher [Frank Castle] |
| 1 | Punisher | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Jimmy Palmiotti | Punisher |
| 2 | Marvel Knights Punisher The Complete Collection Vol. 1 | illustration | 1 | pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor | |
| 3 | - | credits, title page | 1 | letters: typeset | |
| 4 | The Punisher #1 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 5 | Welcome Back, Frank | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Mr. Bumpo, Frank Castle, Joan the Mouse, Punisher, Spacker Dave |
| 6 | The Punisher #2 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 7 | Badaboom, Badabing | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Mr. Bumpo, Frank Castle, Ma Gnucci, The Holy, Joan the Mouse, Punisher, Hector Redondo, Martin Soap, Spacker Dave |
| 8 | The Punisher #3 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Daredevil, Matt Murdock, Punisher |
| 9 | The Devil by the Horns | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Mr. Bumpo, Frank Castle, Daredevil, The Holy, Joan the Mouse, Matt Murdock, Punisher, Hector Redondo, Martin Soap, Spacker Dave |
| 10 | The Punisher #4 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 11 | Wild Kingdom | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Frank Castle, Ma Gnucci, The Holy, Punisher, Hector Redondo, Martin Soap, Molly von Richthofen |
| 12 | The Punisher #5 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 13 | Even Worse Things | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Mr. Bumpo, Frank Castle, The Elite, Ma Gnucci, The Holy, Joan the Mouse, Kevin, Mr. Payback, Punisher, Hector Redondo, Martin Soap, Spacker Dave, Molly von Richthofen |
| 14 | The Punisher #6 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 15 | Spit Out of Luck | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Frank Castle, The Elite, Ma Gnucci, Mr. Payback, Punisher, Martin Soap, Spacker Dave, Molly von Richthofen |
| 16 | The Punisher #7 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 17 | Bring Out Your Dead | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Frank Castle, The Elite, Ma Gnucci, The Holy, Joan the Mouse, Mr. Payback, Punisher, Hector Redondo, Martin Soap, Spacker Dave, Molly von Richthofen |
| 18 | The Punisher #8 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 19 | Desperate Measures | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Frank Castle, Ma Gnucci, Joan the Mouse, Kevin, Punisher, The Russian, Martin Soap, Spacker Dave, Molly von Richthofen |
| 20 | The Punisher #9 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 21 | From Russia with Love | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Mr. Bumpo, Frank Castle, The Elite, Ma Gnucci, The Holy, Joan the Mouse, Kevin, Mr. Payback, Punisher, Hector Redondo, The Russian, Martin Soap, Spacker Dave, Molly von Richthofen |
| 22 | The Punisher #10 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 23 | Glutton for Punishment | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Frank Castle, The Elite, Ma Gnucci, The Holy, Mr. Payback, Punisher, Hector Redondo, The Russian, Martin Soap, Molly von Richthofen |
| 24 | The Punisher #11 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 25 | Any Which Way You Can | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Mr. Bumpo, Frank Castle, The Elite, Ma Gnucci, The Holy, Joan the Mouse, Mr. Payback, Punisher, Hector Redondo, The Russian Death, Martin Soap, Spacker Dave, Molly von Richthofen |
| 26 | The Punisher #12 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 27 | Go Frank Go | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Wes Abbott | Mr. Bumpo, Frank Castle, The Elite Death, Ma Gnucci Death, The Holy Death, Joan the Mouse, Mr. Payback Death, Punisher, Hector Redondo Death, Martin Soap, Spacker Dave, Molly von Richthofen |
| 28 | The Punisher #1 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Frank Castle, Punisher |
| 29 | Well Come on Everybody and Let's Get Together Tonight | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: RS, Comicraft's Wes Abbott | Frank Castle, Kevin, Punisher, The Russian, Martin Soap |
| 30 | The Punisher #2 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 31 | Does Whatever a Spider Can | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Comicraft's Wes Abbott, RS | Punisher; Spider-Man [Peter Parker]; Soap; The Russian (villain) |
| 32 | The Punisher #3 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | The Punisher |
| 33 | American Ugly | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: RS, Comicraft's Wes Abbott | The Punisher [Frank Castle]; Deputy Commissioner; Kriegkopf; Colonel Jeam Romilly; Terry Saint; Hackett; The Russian; Rodriguez; |
| 34 | The Punisher #4 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | The Punisher |
| 35 | Dirty Work | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: RS, Comicraft's Wes Abbott | The Punisher [Frank Castle]; Jean Romilly; Hackett; Terry Saint; Major; Kriegkopf; The Russian |
| 36 | The Punisher #5 | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | The Punisher |
| 37 | No Limits | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor; letters: Richard Starkings, Comicraft's Saida | The Punisher [Frank Castle]; The Russian; Kreigkopf; Jean Romilly; Doctor; President |
| 38 | Punisher Kills the Marvel Universe | cover reprint (on interior page) | 1 | pencils: Nick Percival; inks: Nick Percival; colors: Nick Percival | |
| 39 | Punisher Kills the Marvel Universe | comic story | 47 | script: Garth Ennis; pencils: Dougie Braithwaite; inks: Robin Riggs, Michael Halbleib, Sean Hardy, Don Hudson, John Livesay, Martin Griffiths; colors: Shannon Blanchard, Tom Smith, Malibu; letters: Bill Oakley | Punisher; Daredevil; Avengers; X-Men; Cyclops; Wolverine; Spider-Man; Venom; Microchip; Hulk; Kingpin; Dr. Doom; Magneto; Storm; X-Force; X-Factor; Alpha Flight; Brotherhood of Evil Mutants; Captain America; Apocalypse; Juggernaut; Skrulls; Brood; Cable |
| 40 | Getting It Right Introduction from Punisher by Garth Ennis Omnibus | text article | 1 | script: Jimmy Palmiotti | |
| 41 | The Punisher #1 (2000) Dan Jurgens Variant | cover reprint (on interior page) | 1 | pencils: Dan Jurgens; inks: Jerry Ordway; colors: Soto | Punisher |
| 42 | The Punisher #1 (2000) Steve Dillon Variant | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Chris Sotomayor | Punisher |
| 43 | The Punisher #2 (2000) Steve Dillon Variant | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Jimmy Palmiotti; colors: Chris Sotomayor | Punisher [Frank Castle] |
| 44 | The Punisher #2 (2001) Steve Dillon Variant | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Chris Sotomayor | Punisher; Spider-Man [Peter Parker]; The Russian |
| 45 | Punisher Kills the Marvel Universe 2nd Printing Steve Dillon Variant | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Steve Dillon | Punisher [Frank Castle] |
| 46 | In Defence of the Punisher Afterword from The Punisher by Garth Ennis Omnibus | text article | 1 | script: Garth Ennis | |
| 47 | The Vigilante War | text article | 5 | script: Garth Ennis | |
| 48 | Wizard #101 Cover | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Liquid Color | Frank Castle, Punisher |
| 49 | Wizard #105 Cover | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon | Frank Castle, Daredevil, Matt Murdock, Punisher |
| 50 | Wizard #118 Cover | cover reprint (on interior page) | 1 | pencils: Leinil Francis Yu; inks: Leinil Francis Yu | Frank Castle, Punisher |
| 51 | Welcome Back Frank | promo (ad from the publisher) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Chris Sotomayor | Punisher |