| 0 | Marvel Knights border trade dress | cover | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 1 | Marvel Knights Punisher The Complete Collection Vol. 3 | illustration | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | |
| 2 | - | credits, title page | 2 | letters: typeset | |
| 3 | 27 [The Punisher #27] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher; Elektra |
| 4 | Elektra | comic story | 22 | script: Garth Ennis; pencils: Tom Mandrake; inks: Tom Mandrake; colors: Matt Milla; letters: Dave Sharpe | Punisher; Elektra; Soap; The Mob |
| 5 | 28 [The Punisher #28] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 6 | Streets of Laredo Part One | comic story | 22 | script: Garth Ennis; pencils: Cam Kennedy; inks: Avalon Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher |
| 7 | 29 [The Punisher #29] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 8 | Streets of Laredo Part Two | comic story | 22 | script: Garth Ennis; pencils: Cam Kennedy; inks: Avalon Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher |
| 9 | 30 [The Punisher #30] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 10 | Streets of Laredo Part Three | comic story | 22 | script: Garth Ennis; pencils: Cam Kennedy; inks: Avalon Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher |
| 11 | 31 [The Punisher #31] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 12 | Streets of Laredo Conclusion | comic story | 22 | script: Garth Ennis; pencils: Cam Kennedy; inks: Avalon Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher |
| 13 | 32 [The Punisher #32] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 14 | Soap | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Avalon's Matt Milla; colors: Avalon's Matt Milla; letters: VC's Cory Petit | Punisher; Soap (origin) |
| 15 | 33 [The Punisher #33] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 16 | Confederacy of Dunces Part 1 | comic story | 22 | script: Garth Ennis; pencils: John McCrea; inks: Crime Lab Studios, Crime Lab Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Mr. Bumpo, Frank Castle, Daredevil, Ma Gnucci, Joan the Mouse, Logan, Matt Murdock, Peter Parker, Punisher, The Russian, Spacker Dave, Spider-Man, Wolverine |
| 17 | 34 [The Punisher #34] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 18 | Confederacy of Dunces Part 2 | comic story | 22 | script: Garth Ennis; pencils: John McCrea; inks: Crime Lab Studios, Crime Lab Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher; Daredevil; Spider-Man [Peter Parker]; Wolverine; Spacker Dave; Bruce Banner [Hulk]; The Mob (villains) |
| 19 | 35 [The Punisher #35] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 20 | Confederacy of Dunces Part 3 | comic story | 22 | script: Garth Ennis; pencils: John McCrea; inks: Crime Lab Studios, Crime Lab Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher; Daredevil; Spider-Man [Peter Parker]; Wolverine; Bruce Banner [Hulk] |
| 21 | 36 [The Punisher #36] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 22 | Confederacy of Dunces Part 4 | comic story | 22 | script: Garth Ennis; pencils: John McCrea; inks: Crime Lab Studios, Crime Lab Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher; Daredevil; Spider-Man [Peter Parker]; Wolverine; Soap; Spacker Dave; Bruce Banner [Hulk] |
| 23 | 37 [The Punisher #37] | cover reprint (on interior page) | 1 | pencils: Tim Bradstreet; inks: Tim Bradstreet; colors: Tim Bradstreet | Punisher |
| 24 | Confederacy of Dunces Part 5 | comic story | 22 | script: Garth Ennis; pencils: John McCrea; inks: Crime Lab Studios, Crime Lab Studios; colors: Avalon Studios; letters: Virtual Calligraphy's Cory Petit | Punisher; Daredevil; Spider-Man [Peter Parker]; Wolverine; Hulk; Soap; Spacker Dave; Inskipp (death) |
| 25 | War Zone 1 [Punisher: War Zone #1] | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | Punisher; Ma Gnucci |
| 26 | The Resurrection of Ma Gnucci, Part One | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth; letters: VC's Cory Petit | Charlie Schitti; Andy (dies); Punisher; Joey Alceno (flashback); Molly Von Richthofen; Shannon; David McTaggart; Elite II [Tim]; Ma Gnucci lookalike |
| 27 | War Zone 2 [Punisher: War Zone #2] | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | |
| 28 | The Resurrection of Ma Gnucci Part Two | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth; letters: VC's Cory Petit | Punisher; Ma Gnucci lookalike (dies); Pete Alceno (dies); Molly Von Richthofen; Shannon; Charlie Schitti |
| 29 | War Zone 3 [Punisher: War Zone #3] | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | Ma Gnucci |
| 30 | The Resurrection of Ma Gnucci Part Three | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth; letters: VC's Cory Petit | Punisher; Charlie Schitti; Molly Von Richthofen; Shannon; David McTaggart; Elite; Ma Gnucci lookalike |
| 31 | War Zone 4 [Punisher: War Zone #4] | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | |
| 32 | The Resurrection of Ma Gnucci Part Four | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth; letters: VC's Cory Petit | Punisher; Charlie Schitti; Joey Balls (dies); Tommy Bones (dies); Molly Von Richthofen; Ma Gnucci lookalike; Vito; Sammy; Ricky Caruna; Elite |
| 33 | War Zone 5 [Punisher: War Zone #5] | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | Ma Gnucci |
| 34 | The Resurrection of Ma Gnucci Part Five | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth; letters: VC's Cory Petit | Punisher; Charlie Schitti; Elite; Molly Von Richthofen; Ma Gnucci lookalikes (one dies); Vito (dies); Sammy (dies) |
| 35 | War Zone 6 [Punisher: War Zone #6] | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | Punisher; Charlie Schitti; Molly Von Richthofen |
| 36 | The Resurrection of Ma Gnucci Conclusion | comic story | 22 | script: Garth Ennis; pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth; letters: VC's Cory Petit | Punisher; Molly Von Richthofen; Elite; Ma Gnucci lookalikes (dead); Charlie Schitti; Shannon; Elite (dies) |
| 37 | Punisher Ware Zone #1 Variant | cover reprint (on interior page) | 1 | pencils: John Romita Jr.; inks: Klaus Janson; colors: Dean White | Ma Gnucci |
| 38 | Punisher: War Zone #1 Sketch Variant | cover reprint (on interior page) | 1 | pencils: Steve Dillon; inks: Steve Dillon | |
| 39 | Unused Page from Punisher #27 | illustration | 1 | pencils: Tom Mandrake; inks: Tom Mandrake; colors: Matt Milla | |
| 40 | Punisher War Zone #5 Page 9 Original Art | illustration | 1 | pencils: Steve Dillon; inks: Steve Dillon | |
| 41 | - | illustration | 1 | pencils: Steve Dillon; inks: Steve Dillon; colors: Matt Hollingsworth | Punisher; Ma Gnucci |