| 0 | - | cover | 1 | pencils: Carl Potts; inks: Scott Williams; colors: John Kalisz, Jerron Quality Color | Punisher [Frank Castle] |
| 1 | The Punisher War Journal | credits, title page | 2 | letters: typeset | |
| 2 | - | cover reprint (on interior page) | 1 | pencils: Carl Potts; inks: Scott Williams | Frank Castle, Punisher |
| 3 | An Eye for an Eye Chapter One Sunday in the Park | comic story | 28 | script: Carl Potts; pencils: Carl Potts, Jim Lee; inks: Jim Lee; colors: John Wellington; letters: Jim Novak | Punisher [Frank Castle]; Microchip; Hector Montoya (villain); The Mob (villains) |
| 4 | Punishing Profiles | text article | 1 | script: Don Daley | |
| 5 | - | cover reprint (on interior page) | 1 | pencils: Carl Potts; inks: Jim Lee | Frank Castle, Daredevil, Matt Murdock, Punisher |
| 6 | An Eye for an Eye Chapter Two: Tie a Yellow Ribbon | comic story | 26 | script: Carl Potts; pencils: Carl Potts, Jim Lee; inks: Jim Lee; colors: Gregory Wright; letters: Jim Novak | Punisher; Microchip; Daredevil; Jason Hunt; Hatsu Yakamoto; Katherine Yakamoto; Hector Montoya (villain) |
| 7 | Punisher War Journal Equipment Page | character profile | 1 | script: Eliot R. Brown; pencils: Eliot R. Brown; inks: Eliot R. Brown | |
| 8 | - | cover reprint (on interior page) | 1 | pencils: Carl Potts, Jim Lee; inks: Carl Potts | Frank Castle, Jason Hunt, Hector Montoya, Punisher |
| 9 | An Eye for an Eye Chapter Three: A Dish Best Served Cold | comic story | 24 | script: Carl Potts; pencils: Carl Potts, Jim Lee; inks: Jim Lee; colors: Gregory Wright; letters: Jim Novak | Punisher; Microchip; Daredevil; Jason Hunt; Hatsu Yakamoto; Katherine Yakamoto; Manzo; Hector Montoya (villain, death) |
| 10 | Punisher War Journal Equipment Page | character profile | 1 | script: Eliot R. Brown; pencils: Eliot R. Brown; inks: Eliot R. Brown | |
| 11 | - | cover reprint (on interior page) | 1 | pencils: Jim Lee; inks: Carl Potts | Frank Castle, Punisher |
| 12 | Sniper | comic story | 23 | script: John Wellington, Carl Potts; pencils: Jim Lee; inks: Scott Williams, Don Hudson; colors: Gregory Wright; letters: Ken Lopez | Punisher [Frank Castle]; Sniper (villain) |
| 13 | Punisher War Journal Equipment Page | character profile | 1 | script: Eliot R. Brown; pencils: Eliot R. Brown; inks: Eliot R. Brown | |
| 14 | - | cover reprint (on interior page) | 1 | pencils: Jim Lee; inks: Carl Potts | Punisher; Sniper |
| 15 | Crucible | comic story | 22 | script: Carl Potts; pencils: Jim Lee; inks: Scott Williams; colors: Gregory Wright; letters: Ken Lopez | Punisher [Frank Castle]; Sniper (villain) |
| 16 | Punisher War Journal Equipment Page | character profile | 1 | script: Eliot R. Brown; pencils: Eliot R. Brown; inks: Eliot R. Brown | |
| 17 | - | cover reprint (on interior page) | 1 | pencils: Jim Lee; inks: Jim Lee | Logan, Wolverine |
| 18 | On the Track of Unknown Animals | comic story | 22 | script: Carl Potts; pencils: Carl Potts, Jim Lee; inks: Jim Lee; colors: Gregory Wright; letters: Jim Novak | The Punisher; Wolverine; Microchip; Hatsu Yakamoto (cameo); Yuriko (cameo); Phillip (cameo) |
| 19 | - | cover reprint (on interior page) | 1 | pencils: Jim Lee; inks: Carl Potts | Frank Castle, Logan, Punisher, Wolverine |
| 20 | Endangered Species | comic story | 22 | script: Carl Potts; pencils: Carl Potts, Jim Lee; inks: Jim Lee; colors: Gregory Wright; letters: Jim Novak | The Punisher [Frank Castle]; Wolverine |
| 21 | Punisher War Journal Equipment Page | character profile | 1 | script: Eliot R. Brown; pencils: Eliot R. Brown; inks: Eliot R. Brown | |
| 22 | Punisher's Arsenal | character profile | 1 | script: Eliot R. Brown; pencils: Eliot R. Brown; inks: Eliot R. Brown | |
| 23 | Punisher's Arsenal | character profile | 1 | script: Eliot R. Brown; pencils: Eliot R. Brown; inks: Eliot R. Brown | |
| 24 | - | cover reprint (on interior page) | 1 | pencils: Jim Lee; inks: Klaus Janson | Punisher |
| 25 | Damage | comic story | 22 | script: Carl Potts; pencils: Jim Lee; inks: Jim Lee; colors: Gregory Wright; letters: Jim Novak | Punisher [Frank Castle]; Shadowmasters [Hatsu Yakamoto; Yuriko; Manzo]; Phillip; Damage (villain); Bunsen Burner Gang (villains); Sunrise Assassin (villain) |
| 26 | - | illustration | 1 | pencils: Jim Lee; inks: Jim Lee | |