| 0 | - | cover | 1 | pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin | Wolverine |
| 1 | Title Page and Credits | credits, title page | 6 | letters: typeset | |
| 2 | The Flower Cartel | comic story | 30 | script: Benjamin Percy; pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin; letters: VC's Cory Petit | Wolverine [Logan]; Kate Pryde; Marvel Girl [Jean Grey]; Kid Omega [Quentin Quire]; Domino [Neena Thurman]; Sage; Gateway; Jeff Bannister; Meredith Milly; Beast [Hank McCoy]; Pale Girl |
| 3 | If You Really Want to Tangle with Someone | recap | 1 | pencils: Adam Kubert; inks: Adam Kubert | Wolverine [Logan]; Marvel Girl [Jean Grey]; Kate Pryde; Sage; Domino [Neena Thurman]; Kid Omega [Quentin Quire]; Gateway; Beast [Hank McCoy] |
| 4 | Pollen | text story | 1 | script: Benjamin Percy | |
| 5 | The Order of X | text story | 1 | script: Benjamin Percy | |
| 6 | Your Own Worst Enemy | comic story | 20 | script: Benjamin Percy; pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin; letters: VC's Cory Petit | Wolverine [Logan]; Healer; Bishop [Lucas Bishop]; Pyro [St. John Allerdyce]; Storm [Ororo Munroe]; Jeff Bannister; Cyclops [Scott Summers]; The Pale Girl |
| 7 | Port of Entry Report | text story | 1 | script: Benjamin Percy | |
| 8 | Profit and Loss Analysis of Petal Shipments | text story | 1 | script: Benjamin Percy | |
| 9 | You Didn't See Nothing | comic story | 20 | script: Benjamin Percy; pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin; letters: VC's Cory Petit | Wolverine [Logan]; Magneto [Eric Lehnsherr]; Blob [Fred J. Dukes]; Pale Girl; Juggernaut [Cain Marko]; Kid Omega [Quentin Quire]; Celeste Cuckoo; Esme Cuckoo; Irma Cuckoo; Phoebe Cuckoo; Sophie Cuckoo; Storm [Ororo Munroe]; Bishop [Lucas Bishop]; Pyro [St. John Allerdyce]; Iceman [Bobby Drake]; Jeff |
| 10 | Beast's Logbook: Interference | text story | 1 | script: Benjamin Percy | |
| 11 | Central Intelligence Agency Transcription of Interoffice Conversation | text story | 1 | script: Benjamin Percy | |
| 12 | Beast's Logbook: The Problem with Russia | text story | 1 | script: Benjamin Percy | |
| 13 | Catacombs | comic story | 30 | script: Benjamin Percy; pencils: Viktor Bogdanovic; inks: Viktor Bogdanovic; colors: Matthew Wilson; letters: VC's Cory Petit | Wolverine [Logan]; Magneto [Eric Lehnsherr]; Omega Red [Arkady Rossovich]; Cecilia Reyes; Louise; Dracula |
| 14 | Bloodwork | text story | 1 | script: Benjamin Percy | |
| 15 | The Red Tavern | comic story | 20 | script: Benjamin Percy; pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin; letters: VC's Cory Petit | Wolverine [Logan]; Professor X [Charles Xavier]; Magneto [Eric Lehnsherr]; Omega Red [Arkady Rossovich] |
| 16 | The Hidden Gate | text story | 1 | script: Benjamin Percy | |
| 17 | Welcome to the Mutant Trauma Support Group! | text story | 1 | script: Benjamin Percy | |
| 18 | Bloodclocks | comic story | 20 | script: Benjamin Percy; pencils: Viktor Bogdanovic; inks: Viktor Bogdanovic; colors: Matthew Wilson; letters: VC's Cory Petit | Wolverine [Logan]; Professor X [Charles Xavier]; Magneto [Eric Lehnsherr]; Omega Red [Arkady Rossovich] |
| 19 | Wolverine: Blood Group System | text story | 1 | script: Benjamin Percy | |
| 20 | - | text story | 1 | script: Benjamin Percy | |
| 21 | - | cover reprint (on interior page) | 1 | pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin | Wolverine |
| 22 | - | cover reprint (on interior page) | 1 | pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin | Wolverine [Logan]; Sabretooth [Victor Creed]; Lady Deathstrike [Yuriko Oyama] |
| 23 | - | cover reprint (on interior page) | 1 | pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin | Wolverine [Logan] |
| 24 | - | cover reprint (on interior page) | 1 | pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin | Wolverine [Logan]; Omega Red [Arkady Rossovich] |
| 25 | - | cover reprint (on interior page) | 1 | pencils: Adam Kubert; inks: Adam Kubert; colors: Frank Martin | Wolverine [Logan] |
| 26 | - | cover reprint (on interior page) | 0.11 | pencils: Alex Ross; inks: Alex Ross; colors: Alex Ross | Wolverine |
| 27 | - | cover reprint (on interior page) | 0.11 | pencils: Jeehyung Lee; inks: Jeehyung Lee; colors: Jeehyung Lee | Wolverine; Sentinel |
| 28 | #1 Hidden Gem Variant | cover reprint (on interior page) | 0.11 | pencils: Jim Lee; inks: Jim Lee; colors: Jason Keith | Wolverine |
| 29 | #1 Party Sketch Variant | cover reprint (on interior page) | 0.11 | pencils: Rahzzah; inks: Rahzzah; colors: Rahzzah | Logan [Wolverine] |
| 30 | #1 Party Variant | cover reprint (on interior page) | 0.12 | pencils: Rahzzah; inks: Rahzzah; colors: Rahzzah | Wolverine |
| 31 | - | cover reprint (on interior page) | 0.11 | pencils: Skottie Young; inks: Skottie Young; colors: Skottie Young | Wolverine |
| 32 | - | cover reprint (on interior page) | 0.11 | pencils: Gabriele Dell'Otto; inks: Gabriele Dell'Otto; colors: Gabriele Dell'Otto | Wolverine |
| 33 | #2 Spider-Woman Variant | cover reprint (on interior page) | 0.11 | pencils: Gerald Parel; inks: Gerald Parel; colors: Gerald Parel | Wolverine; Spider-Woman [Jessica Drew] |
| 34 | - | cover reprint (on interior page) | 0.11 | pencils: David Finch; inks: David Finch; colors: Frank D'Armata | Wolverine |
| 35 | #2 God Loves, Man Kills Variant | cover reprint (on interior page) | 0.11 | pencils: Marcos Martín; inks: Marcos Martín; colors: Marcos Martín | Professor X; Colossus; Storm; Wolverine; Nightcrawler; Kitty Pryde |
| 36 | - | cover reprint (on interior page) | 0.11 | pencils: Tony Daniel; inks: Tony Daniel; colors: Rain Beredo | Wolverine; The Hand |
| 37 | #3 Marvel Zombies Variant | cover reprint (on interior page) | 0.11 | pencils: Tom Raney; inks: Tom Raney; colors: Dean White | Wolverine (as a zombie) |
| 38 | - | cover reprint (on interior page) | 0.11 | pencils: Greg Hildebrandt; inks: Greg Hildebrandt; colors: Greg Hildebrandt | Wolverine |
| 39 | - | cover reprint (on interior page) | 0.11 | pencils: Patrick Gleason; inks: Patrick Gleason; colors: Morry Hollowell | Wolverine; Omega Red |
| 40 | #4 Days of Future Past Variant | cover reprint (on interior page) | 0.11 | pencils: Marcos Martín; inks: Marcos Martín; colors: Marcos Martín | Wolverine; Sentinel |
| 41 | - | cover reprint (on interior page) | 0.11 | pencils: Viktor Bogdanovic; inks: Viktor Bogdanovic; colors: Viktor Bogdanovic | Wolverine |
| 42 | #5 Heroes at Home Variant | cover reprint (on interior page) | 0.23 | script: Zeb Wells; pencils: Gurihiru; inks: Gurihiru; colors: Gurihiru | Wolverine |