| 0 | - | cover | 1 | pencils: Walter Simonson; inks: Josef Rubinstein; colors: Matt Milla | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman] |
| 1 | Epic Collection | promo (ad from the publisher) | 1 | pencils: various; inks: various; letters: typeset | Thor; Spider-Man; Iron Man; Black Widow; Captain America; Luke Cage; Iron Fist; Misty Knight; Wolverine; Doctor Strange; Hulk; Daredevil |
| 2 | Genesis & Apocalypse | credits, title page | 1 | pencils: Walt Simonson; inks: Joe Rubinstein | |
| 3 | - | credits, title page | 1 | letters: typeset | |
| 4 | - | table of contents | 1 | letters: typeset | |
| 5 | What Lurks within the Cocoon? | cover reprint (on interior page) | 1 | pencils: John Buscema; inks: Tom Palmer; colors: Christie Scheele | Avengers [Black Knight [Dane Whitman]; Captain America [Steve Rogers]; Captain Marvel [Monica Rambeau]; Hercules; Namor the Sub-Mariner]; Jean Grey (within the cocoon) |
| 6 | What Lurks Below? | comic story | 22 | script: Roger Stern; pencils: John Buscema; inks: Tom Palmer; colors: Christie Scheele; letters: Jim Novak | Avengers [Black Knight [Dane Whitman]; Captain America [Steve Rogers]; Captain Marvel [Monica Rambeau]; Hercules; Namor the Sub-Mariner; the Wasp [Janet Van Dyne]]; The Enclave [Morlak; Shinski; Zota]; Derek Freeman; Her (flashback); Jean Grey; Melter; Raymond Sikorski; Scourge; Adam Warlock (flashb |
| 7 | Like a Phoenix... | cover reprint (on interior page) | 1 | pencils: John Byrne; inks: Terry Austin | Fantastic Four [Mr. Fantastic [Reed Richards]; Invisible Woman [Sue Storm Richards]; She-Hulk [Jennifer Walters]; Human Torch [Johnny Storm]]; Jean Grey |
| 8 | Like a Phoenix! | comic story | 30 | script: John Byrne, Chris Claremont; pencils: John Byrne, Jackson Guice; inks: Terry Austin, Jackson Guice; colors: Glynis Oliver; letters: John Workman | Fantastic Four [Mr. Fantastic [Reed Richards]; Invisible Woman [Sue Storm Richards]; She-Hulk [Jennifer Walters]; Human Torch [Johnny Storm]]; The Avengers [Captain America [Steve Rogers]; Hercules; Black Knight (cameo flashback); Namor, the Sub-Mariner (cameo flashback); Wasp (cameo flashback)]; Je |
| 9 | Baptism of Fire! | cover reprint (on interior page) | 1 | pencils: Walt Simonson; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman] |
| 10 | Third Genesis | comic story | 42 | script: Bob Layton; pencils: Jackson Guice; inks: Bob Layton, Jackson Guice, Joe Rubinstein; colors: Petra Scotese, Max Scheele, Glynis Oliver | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Cameron Hodge; Madelyne Pryor; Nathan Christopher Summers; Candy Southern; Mr. Fantastic |
| 11 | X-Factor Vs. the Mutant Menace of Tower!! | cover reprint (on interior page) | 1 | pencils: Mike Zeck; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Angel; Iceman]; Tower |
| 12 | Bless the Beasts and Children | comic story | 23 | script: Jackson Guice, Bob Layton; pencils: Jackson Guice; inks: Joe Rubinstein; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Artie; Cameron Hodge; Vera Cantor; Tower; Carl Maddicks |
| 13 | - | cover reprint (on interior page) | 1 | pencils: Ron Frenz; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman; Artie] |
| 14 | Regression Obsession | comic story | 23 | script: Bob Layton; pencils: Jackson Guice; inks: Josef Rubinstein; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Vera Cantor; Senator Thompson; Cameron Hodge; Artie; Tower; Carl Maddicks; Mr. Vallencourt |
| 15 | The Power of Frenzy! | cover reprint (on interior page) | 1 | pencils: Ron Frenz; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Frenzy |
| 16 | Trials and Errors | comic story | 23 | script: Bob Layton; pencils: Keith Pollard; inks: Joe Rubinstein; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Artie; Cameron Hodge; Candy Southern; Headmaster Woodley; Martin Davis; Frenzy [Johanna Cargill]; Tower |
| 17 | - | cover reprint (on interior page) | 1 | pencils: Walter Simonson; inks: Walter Simonson | Iron Man [Tony Stark]; X-Factor [Cyclops; Jean Grey; Angel; Iceman; Beast] |
| 18 | When Innocence Dies! | comic story | 40 | script: Bob Harras; pencils: Paul Neary; inks: Ian Akin, Brian Garvey; colors: Petra Scotese; letters: L. Lois Buhalis | Iron Man [Tony Stark]; Willie Evans Jr; Willie Evans Sr.; Nick Fury; S.H.I.E.L.D.; Mr. Fantastic; Franklin Richards; Dr. Wilburn; Dr. Sorel; Guardsman [Michael O'Brien]; Cameron Hodge; X-Factor [Cyclops; Jean Grey; Angel; Iceman; Beast] |
| 19 | - | cover reprint (on interior page) | 1 | pencils: Bob Layton; inks: Bob Layton | X-Factor [Angel; The Beast; Cyclops; Jean Grey]; Crimson Dynamo [Dimitri Bukharin]; Doppelganger |
| 20 | Grand Design | comic story | 40 | script: Bob Layton; pencils: Bob Layton; inks: Brett Breeding; colors: Petra Scotese; letters: Janice Chiang | X-Factor [Jean Grey; Iceman; Angel; Cyclops; The Beast]; Cameron Hodge; Sasha Yasinov; Major Nikolai Lizbek; Crimson Dynamo [Dimitri Bukharin]; Senator Thompson; Doppelganger [Dr. Wolfgang Helmut Heinreich]; Anatoly; Yuri; Father Alexi Garnoff; Mentac, the Living Computer; Concussion [Mikhail]; Iron |
| 21 | X-Factor vs. the Alliance of Evil! | cover reprint (on interior page) | 1 | pencils: Ron Frenz; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Alliance of Evil [Tower; Frenzy; Timeshadow; Stinger] |
| 22 | Tapped Out | comic story | 22 | script: Bob Layton; pencils: Jackson Guice; inks: Joe Rubinstein; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Artie; Michael Nowlan; Alliance of Evil [Tower; Frenzy [Johanna Cargill]; Timeshadow; Stinger]; Apocalypse; Madelyne Pryor; Suzy Nowlan; Vera Cantor; Cameron Hodge |
| 23 | And Now--Apocalypse! | cover reprint (on interior page) | 1 | pencils: Ron Frenz; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Apocalypse |
| 24 | Apocalypse Now! | comic story | 22 | script: Louise Simonson; pencils: Jackson Guice; inks: Bob McLeod; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Michael Nowlan; Apocalypse; Tower; Frenzy; Timeshadow; Stinger; Sergeant Gorelli; Joe Simsky; Ruby; Suzy Nowlan |
| 25 | - | cover reprint (on interior page) | 1 | pencils: Ron Frenz; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Bulk; Glow Worm |
| 26 | Fallout! | comic story | 22 | script: Louise Simonson; pencils: Jackson Guice; inks: Josef Rubinstein; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Artie; Bulk; Glow Worm; Skids; Trish Tilby; Vera Cantor; Cameron Hodge; Tower |
| 27 | - | cover reprint (on interior page) | 1 | pencils: Rick Leonardi; inks: Bob Layton | Spider-Man [Peter Parker] |
| 28 | The Fury of X-Factor! | comic story | 22 | script: Tom DeFalco; pencils: Rick Leonardi; inks: Bob Layton; colors: Nel Yomtov; letters: Joe Rosen | Spider-Man [Peter Parker]; Mary Jane Watson; J. Jonah Jameson; Robbie Robertson; Cameron Hodge; Betty Leeds; X-Factor [Cyclops; Jean Grey; Iceman; Beast; Angel [Warren Worthington III]] |
| 29 | Freedom Force Wants Them-- X-Factor Wants Them-- But Rusty and Skids Just Want Out!! | cover reprint (on interior page) | 1 | pencils: Marc Silvestri; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Iceman]; Rusty Collins; Freedom Force [Mystique; Blob; Avalanche]; Skids |
| 30 | Lost and Found! | comic story | 22 | script: Louise Simonson; pencils: Marc Silvestri; inks: Josef Rubinstein; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Artie; Skids; Trish Tilby; Cameron Hodge; Vera Cantor; Freedom Force [Mystique; Blob; Avalanche; Pyro; Destiny; Spiral; Spider-Woman [Julia Carpenter]] |
| 31 | - | cover reprint (on interior page) | 1 | pencils: Marc Silvestri; inks: Joe Rubinstein | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Freedom Force [Mystique; Blob; Avalanche; Pyro; Spider-Woman [Julia Carpenter]] |
| 32 | Spots! | comic story | 23 | script: Louise Simonson; pencils: Terry Shoemaker; inks: Joe Rubinstein; colors: Petra Scotese; letters: Joe Rosen | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Artie Maddicks; Skids; Trish Tilby; Cameron Hodge; Magneto; Leech; Caliban; Val Cooper; Freedom Force [Mystique; Blob; Avalanche; Pyro; Destiny; Spider-Woman [Julia Carpenter]] |
| 33 | - | foreword, introduction, preface, afterword | 1 | pencils: John Bolton; inks: John Bolton | |
| 34 | I Am Phoenix! | comic story | 12 | script: Chris Claremont; pencils: John Bolton; inks: John Bolton; colors: Glynis Oliver; letters: Tom Orzechowski | X-Men [Cyclops; Nightcrawler; Colossus; Banshee; Wolverine; Storm; Professor X; Marvel Girl [Jean Grey]]; Peter Corbeau; Phoenix Force |
| 35 | Flights of Angels | comic story | 13 | script: Chris Claremont; pencils: Mike Collins; inks: Joe Rubinstein; colors: Bob Sharen; letters: Joe Rosen | Jean Grey; Cyclops; D'Bari Aliens; Shi'ar; Mr. Sinister |
| 36 | Here Comes... X-Factor! | cover reprint (on interior page) | 1 | pencils: Bob Layton; inks: Jackson Guice | |
| 37 | The Mutant Report | text article | 8 | script: Dwight Jon Zimmerman; pencils: Bob Layton; inks: Jackson Guice | |
| 38 | Who Did You Think Was the Fifth Member of X-Factor? | cover reprint (on interior page) | 1 | pencils: Bob Layton; inks: Bob Layton | |
| 39 | The Fifth Factor | text article | 4 | script: Kurt Busiek; pencils: Bob Layton; inks: Jackson Guice | |
| 40 | - | cartoon | 2 | script: Fred Hembeck; pencils: Fred Hembeck; inks: Fred Hembeck; colors: Fred Hembeck; letters: Fred Hembeck | |
| 41 | - | cover reprint (on interior page) | 1 | pencils: Paul Smith; inks: Paul Smith; colors: Liquid! Graphics | |
| 42 | All My Fault | foreword, introduction, preface, afterword | 1 | script: Kurt Busiek | |
| 43 | The Rise of "The Rise of Apocalypse" | foreword, introduction, preface, afterword | 1 | letters: typeset | |
| 44 | Fantastic Four #286 Original Pages | comic story | 5 | script: John Byrne; pencils: John Byrne; inks: John Byrne | Jean Grey; Hercules; Mr. Fantastic; Invisible Woman; Captain America; Phoenix |
| 45 | The Mutant Report | illustration | 1 | pencils: Jackson Guice; inks: Bob Layton | |
| 46 | A Second X-Factor #1 Unused Cover | illustration | 1 | pencils: Jackson Guice; inks: Bob Layton | |
| 47 | X-Factor #8 Unused Cover | illustration | 1 | pencils: Jerry Ordway; inks: Jerry Ordway | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Rusty Collins; Freedom Force [Mystique; Blob; Spiral; Pyro; Avalanche; Spider-Woman [Julia Carpenter]] |
| 48 | Classified Top Secret | illustration | 1 | letters: typeset | |
| 49 | Amazing Heroes #83 Cover Art | cover reprint (on interior page) | 1 | pencils: Butch Guice; inks: Bob Layton | |
| 50 | Overstreet's Price Update #5 Cover Art | cover reprint (on interior page) | 1 | pencils: Arthur Adams; inks: Bob Wiacek | |
| 51 | Original Art | illustration | 2 | pencils: John Buscema, John Byrne, Walter Simonson, Jackson Guice, Keith Pollard, Bob Layton; inks: Tom Palmer, Terry Austin, Josef Rubinstein, Jackson Guice, Brett Breeding | |
| 52 | At the Mercy of X-Factor! | cover reprint (on interior page) | 1 | pencils: M. C. Wyman; inks: Bill Anderson | Spider-Man [Peter Parker]; X-Factor [Cyclops; Jean Grey; Iceman; Beast; Angel] |
| 53 | Fantastic Four Visionaries: John Byrne Vol. 7 TPB Cover Art | cover reprint (on interior page) | 1 | pencils: John Byrne; inks: Terry Austin; colors: Tom Chu | |
| 54 | X-Men: Phoenix Rising Premiere HC Back-Cover Art | illustration | 1 | pencils: John Bolton; inks: John Bolton; colors: Chris Sotomayor | |
| 55 | Essential X-Factor Vol. 1 Cover | cover reprint (on interior page) | 1 | pencils: Walt Simonson; inks: Joe Rubinstein; colors: Matt Milla | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman] |
| 56 | Back Cover Artwork | cover reprint (on interior page) | 1 | pencils: Ron Frenz; inks: Joe Rubinstein; colors: Veronica Gandini | X-Factor [Cyclops; Jean Grey; Beast; Angel; Iceman]; Apocalypse |
| 57 | One Triumphant Return, One Diabolical Debut! | promo (ad from the publisher) | 1 | pencils: Ron Frenz; inks: Josef Rubinstein; colors: Veronica Gandini | |