| 0 | - | cover | 0 | pencils: Tony Harris; inks: Tony Harris; colors: Tony Harris | |
| 1 | - | cover | 1 | | |
| 2 | - | blank page(s) | 3 | | |
| 3 | Ex Machina: The Deluxe Edition, Book One | credits, title page | 1 | | |
| 4 | Credits | credits, title page | 1 | letters: typeset | |
| 5 | Dedications | text article | 1 | script: Brian K. Vaughan, Tony Harris, Tom Feister, JD Mettler | |
| 6 | Introduction | foreword, introduction, preface, afterword | 1 | script: Brad Meltzer | |
| 7 | Chapter 1: The Pilot | credits, title page | 1 | letters: typeset | |
| 8 | - | cover reprint (on interior page) | 1 | pencils: Tony Harris; inks: Tony Harris; colors: Tony Harris | Mitchell Hundred; Kremlin; Bradbury |
| 9 | - | comic story | 30 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred [Great Machine] (origin, also in flashback to September 11, 2001, November 2, 1976, October 18, 1999, February 4, 2000, April 10, 2000, June 30, 2001); Martha Hundred (in flashback to November 2, 1976); Kremlin [Ivan Tereshkov] (also in flashback to November 2, 1976 and February 4, |
| 10 | Chapter 2: State of Emergency | credits, title page | 1 | letters: typeset | |
| 11 | - | cover reprint (on interior page) | 1 | pencils: Tony Harris; inks: Tony Harris; colors: Tony Harris | Abe Lincoln |
| 12 | Chapter One | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred [Great Machine] (also in flashback to June 15, 2001); Commissioner Amy Angotti (introduction, also in flashback to June 15, 2001); Candice (introduction); Dave Wylie; Rick Bradbury |
| 13 | Chapter Two | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Dave Wylie; Candy; Commissionner Amy Angotti; Kremlin; Journal Moore |
| 14 | Chapter Three | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred (also in flashback as the Great Machine on October 13, 2000); Kremlin (also in flashback to October 13, 2000); Rick Bradbury (also in flashback to October 13, 2000); Commissioner Amy Angotti; Journal Moore; Trista Braving (introduction); Trip; Candy |
| 15 | Chapter Four | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred (also in flashback to May 8, 2001 as the Great Machine); Kremlin (also in flashback to May 8, 2001); Rick Bradbury (also in flashback to May 8, 2001); Dave Wylie; Journal Moore; Trista Braving; Candice |
| 16 | Chapter 3: Tag | credits, title page | 1 | letters: typeset | |
| 17 | - | cover reprint (on interior page) | 1 | pencils: Tony Harris; inks: Tony Harris; colors: Tony Harris | Mitchell Hundred |
| 18 | Chapter One | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Jackson Georges; Bradbury; Suzanne Padilla; Wylie; Journal |
| 19 | Chapter Two | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister, Tony Harris; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Jackson Georges; Wylie; Candace; Journal; Suzanne Padilla; Bradbury |
| 20 | Chapter Three | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Jackson Georges; Suzanne Padilla |
| 21 | Chapter Four | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Jackson Georges; Bradbury; Commissioner Angotti; Suzanne Padilla |
| 22 | Chapter Five | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Suzanne Padilla; Jackson Georges; Candace; Wylie; Jackson Georges |
| 23 | Chater 4: Fortune Favors | credits, title page | 1 | letters: typeset | |
| 24 | - | cover reprint (on interior page) | 1 | pencils: Tony Harris; inks: Tony Harris; colors: Tony Harris | Mitchell Hundred |
| 25 | - | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister, Karl Story; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Commissioner Angotti; Bradbury |
| 26 | Brian K. Vaughan's Original Proposal | text article | 9 | script: Brian K. Vaughan | |
| 27 | Biographies | text article | 1 | pencils: various; inks: various; letters: typeset | |
| 28 | - | blank page(s) | 3 | | |
| 29 | - | illustration | 1 | | |
| 30 | - | promo (ad from the publisher) | 0 | pencils: Tony Harris; inks: Tony Harris; colors: Tony Harris | Mitchell Hundred |