| 0 | - | cover | 0 | pencils: Tony Harris; inks: Tony Harris; colors: Tony Harris | |
| 1 | Introduction | foreword, introduction, preface, afterword | 1 | script: Lily Wachowski, Lana Wachowski | |
| 2 | Chapter 1: Fact v. Fiction | credits, title page | 1 | | |
| 3 | Part One | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Kremlin; Bradbury; Wylie; Candace; Ray; Leto; Commissioner Angotti |
| 4 | Part Two | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Kremlin; Ray; Leto; Commissioner Angotti; Bradbury |
| 5 | Part Three | comic story | 24 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Bradbury; Kremlin; Commissioner Angotti; Leto; Ray |
| 6 | Chapter 2: Off the Grid | credits, title page | 1 | | |
| 7 | Part One | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred (also in flashback); Bradbury; Wylie; Martha Hundred |
| 8 | Part Two | comic story | 21 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Martha Hundred (also in 1969 flashback); Mitchell Hundred (also in 1969 flashback); Thomas Hundred (dies in 1969 flashback) |
| 9 | Chapter 3: March to War | credits, title page | 1 | | |
| 10 | Part One | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Amy Angotti; Journal Moore |
| 11 | Part Two | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Bradbury; Amy Angotti |
| 12 | Part Three | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Wylie; Journal Moore; Amy Angotti |
| 13 | Part Four | comic story | 22 | script: Brian K. Vaughan; pencils: Tony Harris; inks: Tom Feister; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred; Journal Moore; David Wylie; Commissioner Angotti; Bradbury; Suzanne Padilla |
| 14 | Chapter 4: Life & Death | credits, title page | 1 | | |
| 15 | Part One | comic story | 22 | script: Brian K. Vaughan; pencils: Chris Sprouse; inks: Karl Story; colors: JD Mettler; letters: Jared K. Fletcher | Dremaceo; Mitchell Hundred [the Great Machine] (also in flashback to March 2001); Jack Pherson (also in flashback to March 2001); Holly (dies in flashback to March 2001); Kremlin (also in flashback to March 2001); Bradbury (also in flashback to March 2001) |
| 16 | Part Two | comic story | 22 | script: Brian K. Vaughan; pencils: Chris Sprouse; inks: Karl Story; colors: JD Mettler; letters: Jared K. Fletcher | Mitchell Hundred [The Great Machine] (also in flashback to May 2001); Jack Pherson (in flashback to May 2001); Kremlin (in flashback to May 2001); Bradbury (also in flashback to May 2001) |
| 17 | The Full Script for Ex Machina #20 | text story | 22 | script: Brian K. Vaughan; pencils: Tony Harris | |